Pairwise Alignments

Query, 558 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 562 a.a., Putative transport protein from Variovorax sp. SCN45

 Score =  275 bits (704), Expect = 3e-78
 Identities = 178/565 (31%), Positives = 303/565 (53%), Gaps = 25/565 (4%)

Query: 8   LLEQNPILLIFVVLAIGLSFGKIRFGSFQLGNSIGVLITSLIMGHLGFSFTPEALTIGFM 67
           L +++P + +F+ LA+G   GKI+FG FQLG   G L+ ++++  +G         + F 
Sbjct: 7   LFKKSPEMALFLSLAVGYWIGKIKFGKFQLGGVAGSLLVAVVVSQVGVQVDGGVKAVLFA 66

Query: 68  LFIYCVGIEAGPNFFGIFFRDGKHYLILSLVVLITATWIAYFGGYYLNLDYGLAAGMMAG 127
           LFIY VG E+GP FF    R     +IL+ V+  T             LD GLAAG+ AG
Sbjct: 67  LFIYAVGFESGPQFFSSLGRQSIKEIILAAVMAATGLATVVVMAKLFGLDKGLAAGVAAG 126

Query: 128 ALTSTPVLVGAQDALNS-GLAAVPRHMDLSLILDNVSVGYAMAYLIGLI-SMIMFAKLLP 185
            LT + ++  A DA+   GL A     + + +  NV++GYA+ Y+ G   ++I+   +LP
Sbjct: 127 GLTQSAIIGTAGDAIGKLGLEAA----ETARLQGNVAIGYAVTYVFGSFGAIIVCVNILP 182

Query: 186 KLQKQNLSDSAQQIAQERGLGSQRKVYLPIIRAYRVGPELINWI------DGRNLREL-G 238
           KL  + + D A  IA E  + +  KV  P        P L+  I        R + ++  
Sbjct: 183 KLMGRTIRDDA--IAAETAMQAGVKVLGP--DQEEAAPSLVGRIYELTSDPKRTVADIEN 238

Query: 239 IYRQTGCYIERIRRHGILAHPDGDAILQEGDEIALVGFPDSHARLDPSFRNGKEVFDRNL 298
               T   IER++R G       + +L++GD +  VG  D+     P    GKEV+  + 
Sbjct: 239 ANPATTITIERVKRDGKFVEVSPELVLRQGDIVLAVGRRDAVVANAPLL--GKEVYAVDG 296

Query: 299 LDLRISEEEIVVKSDSIAGKRLSDLNLS-----EYGCFLNRVVRAQIEMPMDLDIVLAKG 353
           ++L + + EIV+ +    GK +  +  +      +G F+ ++ R    +PM  D V+  G
Sbjct: 297 MELTMQKREIVLTNKEFEGKTVDVIRKATAGGVRHGIFVVQLSRMGKVLPMKPDTVVQAG 356

Query: 354 DVLQVSGEKSKVKGLADKIGFISVHSQMADLLAFCSFFILGILFGLVTMTFGQVSFSLGN 413
           D++ + G +  VK +A  +G + V S   D +   +  ++G+L GL+++  G +  +LG 
Sbjct: 357 DLVSIFGAEQDVKRVAAIVGDVIVPSAKTDFVYLGAGLVVGLLVGLLSVKIGNIPLTLGA 416

Query: 414 AVGLLLSGITLGFLRANHPTFGYVPQGALNMVKDLGLAIFMVGIGLNAGSKMFQHLSEVG 473
             G LL+G+  G+ RA   TFG +P  A+ ++KDLGLA F+V +GL++G +  Q + ++G
Sbjct: 417 GGGALLAGLLFGWYRAKKQTFGALPPSAVQLLKDLGLAGFVVVVGLSSGLQAVQTIKQLG 476

Query: 474 VQVIGLAFLVSVVPVVFAYLVGAYILKM-NRALLFGAIIGARTCAPAMDVVNEYAKSTIP 532
           + + G+  +V++VP++   L G Y+L+  N A+  GA+ G+R+  PA   V + A+++IP
Sbjct: 477 LTIFGVGVVVTIVPMLLTMLFGRYVLRYDNTAVFAGALSGSRSANPAFGEVLDKAENSIP 536

Query: 533 ALGYAGTYAIANILMTLTGTIFILL 557
            + +A TYA+AN+ +TL G + + L
Sbjct: 537 TVPFAITYALANVFLTLLGPLIVAL 561