Pairwise Alignments

Query, 558 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., TrkA, Potassium channel-family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  680 bits (1754), Expect = 0.0
 Identities = 334/516 (64%), Positives = 426/516 (82%), Gaps = 7/516 (1%)

Query: 45  ITSLIMGHLGFSFTPEALTIGFMLFIYCVGIEAGPNFFGIFFRDGKHYLILSLVVLITAT 104
           + SL++G   FS   +AL +GFMLFI+CVG+EAGPNFF IFFRDGK+YL+L+LV++ +A 
Sbjct: 1   VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSAL 60

Query: 105 WIAYFGGYYLNLDYGLAAGMMAGALTSTPVLVGAQDAL-NSGLAAVPRHMDLSLILDNVS 163
            IA   G     D GL AGM+AG++TSTPVLVGA D L +SG+A+      LS  LDN+S
Sbjct: 61  LIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGIAST----QLSSALDNLS 116

Query: 164 VGYAMAYLIGLISMIMFAKLLPKLQKQNLSDSAQQIAQERGLGSQ--RKVYLPIIRAYRV 221
           +GYA+ YLIGL+S+I+ A+ LPKLQ Q+L  SAQQIA+ERGL +   RKVYLP+IRAYRV
Sbjct: 117 LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRV 176

Query: 222 GPELINWIDGRNLRELGIYRQTGCYIERIRRHGILAHPDGDAILQEGDEIALVGFPDSHA 281
           GPEL+ W DG+NLRELGIYRQTGCYIERIRR+GILA+PDGDA+LQ GDEIALVG+PD+HA
Sbjct: 177 GPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHA 236

Query: 282 RLDPSFRNGKEVFDRNLLDLRISEEEIVVKSDSIAGKRLSDLNLSEYGCFLNRVVRAQIE 341
           RLDPSFRNGKEVFDR+LLD+RI  EEIVVK+ +  G+RL+ L L+++GCFLNRV+R+QIE
Sbjct: 237 RLDPSFRNGKEVFDRDLLDMRIVTEEIVVKNHNAVGRRLAQLKLTDHGCFLNRVIRSQIE 296

Query: 342 MPMDLDIVLAKGDVLQVSGEKSKVKGLADKIGFISVHSQMADLLAFCSFFILGILFGLVT 401
           MP+D ++VL KGDVLQVSG+  +VK +AD+IGFIS+HSQ+ DLLAFC+FFI+G++ G++T
Sbjct: 297 MPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFIIGLMIGMIT 356

Query: 402 MTFGQVSFSLGNAVGLLLSGITLGFLRANHPTFGYVPQGALNMVKDLGLAIFMVGIGLNA 461
             F   SF +GNA GLL +GI LGFLRANHPTFGY+PQGALNMVK+ GL +FM G+GL+A
Sbjct: 357 FQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSA 416

Query: 462 GSKMFQHLSEVGVQVIGLAFLVSVVPVVFAYLVGAYILKMNRALLFGAIIGARTCAPAMD 521
           GS +   L  VG Q++    +VS+VPVV  +L GAY+L+MNRALLFGA++GARTCAPAM+
Sbjct: 417 GSGISNGLGAVGGQMLIAGLVVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAME 476

Query: 522 VVNEYAKSTIPALGYAGTYAIANILMTLTGTIFILL 557
           ++++ A+S IPALGYAGTYAIAN+L+TL GT+ +++
Sbjct: 477 IISDTARSNIPALGYAGTYAIANVLLTLAGTLIVII 512



 Score = 58.5 bits (140), Expect = 6e-13
 Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 30/186 (16%)

Query: 14  ILLIFVVLAIGLSFGKIRFG----SFQLGNSIGVLITSLIMG-----HLGFSFTPEAL-- 62
           +L       IGL  G I F     SF +GN+ G+L   +++G     H  F + P+    
Sbjct: 339 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALN 398

Query: 63  ---TIGFMLFIYCVGIEAGPNFFGIFFRDGKHYLILSLVVLITATWIAY-FGGYYLNLDY 118
                G M+F+  VG+ AG          G   LI  LVV +    I + FG Y L ++ 
Sbjct: 399 MVKEFGLMVFMAGVGLSAGSGISNGLGAVGGQMLIAGLVVSLVPVVICFLFGAYVLRMNR 458

Query: 119 GLAAGMMAGALTSTPVLVGAQDALNSGLAAVPRHMDLSLILDNVSVGYAMAYLIGLISMI 178
            L  G M GA T  P +    D   S + A               +GYA  Y I  + + 
Sbjct: 459 ALLFGAMMGARTCAPAMEIISDTARSNIPA---------------LGYAGTYAIANVLLT 503

Query: 179 MFAKLL 184
           +   L+
Sbjct: 504 LAGTLI 509