Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 881 a.a., Chaperone protein ClpB from Xanthobacter sp. DMC5

 Score =  291 bits (746), Expect = 8e-83
 Identities = 180/477 (37%), Positives = 285/477 (59%), Gaps = 37/477 (7%)

Query: 18  RDKRHEFMTVEHLLLALLENDAAREALLACQADID--VLRRELDTFIDQTTPLIPKNDET 75
           R+   +F T EHLL  L+++     + L  +A  +  ++R E++  + +   +   + + 
Sbjct: 23  REGNQQF-TPEHLLKVLMDDPEGLCSGLIQRAGGNPVLVRAEVEAALKKLPKVSGGSGQV 81

Query: 76  RETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHAAYLLKKNDISRLDIV 135
             +Q      +V + A    + +G   VT   +L+A+  E+++ A  +L K         
Sbjct: 82  YLSQ---QLAKVFETAEQAAKKAGDGYVTVERLLLALAIEKDTDAGKMLAKA-------- 130

Query: 136 NFISHGITKASNHSEDSSSDSFGSSDTSEEVSADERLESFATNLNQLAKQGQIDPLIGRD 195
                G+T  + ++   +     ++D++   +A + L+ +A +L Q  + G++DP+IGRD
Sbjct: 131 -----GVTPQTLNAAIEALRKGRTADSATAENAYDALKKYARDLTQAVRDGKLDPVIGRD 185

Query: 196 KELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGNVPEVIQRSVIYSLDIGS 255
           +E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RIV+G+VPE ++   + +LD+GS
Sbjct: 186 EEIRRTIQVLARRTKNNPVLIGEPGVGKTAIVEGLARRIVDGDVPESLKGKSLLALDMGS 245

Query: 256 LLAGTKYRGDFEKRFKSILKQLE-KEKDAILFIDEIHTIIGAGAASGGQVDAANLIKPLL 314
           L+AG KYRG+FE+R KS+L ++E  E   ILFIDE+HT++GAG   G  +DA+NL+KP L
Sbjct: 246 LIAGAKYRGEFEERLKSVLSEVEGAEGGIILFIDEMHTLVGAGKTDGA-MDASNLLKPAL 304

Query: 315 SSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDTTKILMGLKTKYEAHHDV 374
           + G+L C+G+TT  EY    EK+ AL+RRFQ + + EP+++DT  IL GLK KYE HH V
Sbjct: 305 ARGELHCVGATTLDEYRKHVEKDAALARRFQPVFVSEPTVEDTVSILRGLKEKYELHHGV 364

Query: 375 RYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPASRRKKTVGVAEIESMVA 434
           R T+ AL +A  LS +YI +R LPDKAID++DEA +R R+   S+ +      E++S+  
Sbjct: 365 RITDSALVSAAVLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPE------ELDSLDR 418

Query: 435 KMAR------IPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLG 485
           ++ R        +K   ++ KD LK  ++++  L    +    VLT   K  +  LG
Sbjct: 419 EIMRRKIEQEALKKETDTASKDRLKRSEKELADL----EEKASVLTSKWKSEKEKLG 471



 Score =  275 bits (704), Expect = 6e-78
 Identities = 149/363 (41%), Positives = 228/363 (62%), Gaps = 19/363 (5%)

Query: 399 DKAIDVIDEAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQK 458
           +K +  I++AG        S  ++ V  + I  +V++   +P   +   +++ L  ++ +
Sbjct: 511 EKKLADIEKAGGTGG---GSMVEEAVTPSHIAGVVSRWTGVPVDKMLEGEREKLLRMELE 567

Query: 459 MKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKLLGIE 518
           +   V GQ  A+  +  A++  RAGL   ++P+GSFLF GPTGVGKTE+T  L++ L  +
Sbjct: 568 LAKRVVGQSEAVAAVATAVRRARAGLQDPNRPIGSFLFLGPTGVGKTELTKALAEFLFDD 627

Query: 519 ---LLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPD 575
              ++R DMSEY E+HSVSRLIGAPPGYVGYD+GG LT+AV + P+ VVL DE+EKAHPD
Sbjct: 628 ETAMVRIDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEVEKAHPD 687

Query: 576 IFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGV--AETVKKSIG----------LI 623
           +FN+LLQV+D+G LTD  GR  DFRNV+++MT+N G       ++ +G          ++
Sbjct: 688 VFNVLLQVLDDGRLTDGQGRTVDFRNVLIIMTSNLGAEFLADPRQPMGFKVPGHEGEQVV 747

Query: 624 QQDNSHD-AMSEIKKVFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVS 682
             + ++D  M  +++ F PEF NR+D I+ F+ L    +  +VD  +  L+  L+ R ++
Sbjct: 748 SDEEAYDMVMGAVRRHFRPEFINRIDEIVMFHRLKRDQMDHIVDIQLGRLRKLLEDRKIT 807

Query: 683 LEVSEDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDR 742
           +E+S +AR +LA KGYD   GARP+ R IQ+ ++ PLA ++L G ++DG  VKV L    
Sbjct: 808 IELSPEARSFLAEKGYDPAYGARPLKRTIQKLVQDPLAEKILGGEILDGAKVKVGLDGGH 867

Query: 743 LAF 745
           L F
Sbjct: 868 LTF 870