Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 854 a.a., Chaperone protein ClpB from Pseudomonas putida KT2440

 Score =  292 bits (747), Expect = 6e-83
 Identities = 170/417 (40%), Positives = 251/417 (60%), Gaps = 23/417 (5%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAA--REALLACQADIDVLRRELD 59
           L  +L+ +++ A + A    H  +   HLL ALLE      +  L+    DI+ LR+ L 
Sbjct: 6   LTSKLQLAISDAQSLAVGMDHPAIEPVHLLQALLEQQGGSIKPLLMQVGFDINGLRQGLV 65

Query: 60  TFIDQTTPLIPK-NDETRETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQES 118
             +DQ    +PK  + T +   +    R+L +A    Q  G   ++   VL+A   E   
Sbjct: 66  KELDQ----LPKIQNPTGDVNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSK 121

Query: 119 HAAYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADERLESFATN 178
               LL              S G++K +  +  ++     + + +    + + L+ +  +
Sbjct: 122 LGKLLL--------------SQGVSKKALENAINNLRGGAAVNDANAEESRQALDKYTVD 167

Query: 179 LNQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGN 238
           L + A++G++DP+IGRD E+ RT+QVL RR KNNP+L+GE GVGKTAIAEGLA RI+ G 
Sbjct: 168 LTKRAEEGKLDPVIGRDDEIRRTVQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGE 227

Query: 239 VPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEK-EKDAILFIDEIHTIIGAG 297
           VP+ ++   + +LD+G+L+AG KYRG+FE+R KS+L +L K E   ILFIDE+HT++GAG
Sbjct: 228 VPDGLKGKRLLALDMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAG 287

Query: 298 AASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDT 357
              G  +DA N++KP L+ G+L C+G+TT  EY    EK+ AL RRFQK+ + EPS +DT
Sbjct: 288 KGEGA-MDAGNMLKPALARGELHCVGATTLNEYRQFIEKDAALERRFQKVLVEEPSEEDT 346

Query: 358 TKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARL 414
             IL GLK +YE HH V  T+ A+ AA +LS +YI +R LPDKAID+IDEA +R R+
Sbjct: 347 IAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRM 403



 Score =  255 bits (652), Expect = 6e-72
 Identities = 148/424 (34%), Positives = 241/424 (56%), Gaps = 15/424 (3%)

Query: 335 EKERALSRRFQK----IDIVEPSLDDTTKILMGLKTKYEAHHDVRYTNKALRAAVELSAK 390
           E++ A  +R +K    I+ +E    D  +I    K + +    ++   +  R  +E + +
Sbjct: 432 EEDEAAKKRLEKLTEEIERLEREYSDLEEIWASEKAEVQGSAQIQQKIEQSRQELEAARR 491

Query: 391 YINERHLPDKAIDVIDEAGARARLMPASRR------KKTVGVAEIESMVAKMARIPEKSV 444
             +   + +    VI +     +++    +      +  V   EI  +V+K   IP   +
Sbjct: 492 KGDLNRMAELQYGVIPDLERSLQMVDQHGKTDNQLLRNKVTEEEIAEVVSKWTGIPVAKM 551

Query: 445 SSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGK 504
              +++ L  +++ +   V GQ  A+  +  A++ +RAGL   ++P GSFLF GPTGVGK
Sbjct: 552 LEGEREKLLKMEELLHQRVIGQSEAVTAVANAVRRSRAGLSDPNRPSGSFLFLGPTGVGK 611

Query: 505 TEVTLQLSKLL---GIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 561
           TE+   L++ L      ++R DMSE+ E+HSV+RLIGAPPGYVGY++GG LT+AV + P+
Sbjct: 612 TELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPY 671

Query: 562 SVVLLDEIEKAHPDIFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIG 621
           SVVLLDE+EKAHPD+FN+LLQV+++G LTD++GR  DFRN ++VMT+N G A+ +++ +G
Sbjct: 672 SVVLLDEVEKAHPDVFNVLLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQ-IQELVG 730

Query: 622 LIQQDNSHDAMSEIKKVFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGV 681
             ++      M  +   F PEF NR+D ++ F  L    I  + +  +  L+++L  R +
Sbjct: 731 -DREAQRAAVMDAVGAHFRPEFINRIDEVVVFEPLGREQIAGITEIQLGRLRSRLLEREL 789

Query: 682 SLEVSEDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDD 741
           SL +S +A   L   GYD   GARP+ R IQ  ++ PLA  +L G  + G  +   +  D
Sbjct: 790 SLSLSPEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQLILAGKFLPGTAITAKVEGD 849

Query: 742 RLAF 745
            + F
Sbjct: 850 EIVF 853