Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 903 a.a., AAA family ATPase from Paraburkholderia sabiae LMG 24235

 Score =  477 bits (1227), Expect = e-138
 Identities = 288/773 (37%), Positives = 429/773 (55%), Gaps = 83/773 (10%)

Query: 28  EHLLLALLENDAAREALLACQADIDVLRRELDTFIDQTTPLIPKNDETRETQPTLSFQRV 87
           EHLL  L +N      L +       +R  +D    +     P   +     P L  +  
Sbjct: 110 EHLLYVLADNANVAAILESLGVKAADVRAYIDANAVKREGAAPPGQDRIGVSPRL--KSA 167

Query: 88  LQRAVFHVQSSGRSEVTGANVLVAIFSEQESHAAYLLKKNDISRLDIVNFISHGITKASN 147
           L+RA    +  G S V   ++L+ +    ES A  LL     +RL + +      T  + 
Sbjct: 168 LERAFIASRQLGHSYVGAEHLLIGLAEVPESFAGQLL-----ARLGVQSQALRRQTLLAA 222

Query: 148 HSEDSSSDSFGSSDTSEEVSADERLESFATNLNQLAKQGQIDPLIGRDKELERTIQVLCR 207
            +E+ ++     S T         L+  + +L  LA++G++DP+IGR  E+E  ++VL R
Sbjct: 223 GTEEKAAVPAPPSRTPN-------LDKHSRDLTALAREGRLDPVIGRSSEIETMVEVLAR 275

Query: 208 RRKNNPLLVGEAGVGKTAIAEGLAWRIVEGNVPEVIQRSVIYSLDIGSLLAGTKYRGDFE 267
           RRKNNP+L+GE GVGKTA+ EGLA R+V G+VPE ++   +  L++ S++AG KYRG+FE
Sbjct: 276 RRKNNPVLIGEPGVGKTAVVEGLAQRMVNGDVPESLRNKRLVELNVNSIVAGAKYRGEFE 335

Query: 268 KRFKSILKQLEKEKDA-ILFIDEIHTIIGAG-AASGGQVDAANLIKPLLSSGKLRCIGST 325
           +R K ++ ++   +D+ +LF+DE+HTI+GAG   + G +D AN+ KP ++ G+L  IG+T
Sbjct: 336 ERVKQVVDEVLANQDSLVLFVDEVHTIVGAGQGGNEGGLDIANVFKPAMARGELNLIGAT 395

Query: 326 TYQEYSNIFEKERALSRRFQKIDIVEPSLDDTTKILMGLKTKYEAHHDVRYTNKALRAAV 385
           T  EY    EK+ AL RRFQ + I EPS+  T  IL GL+ + EAHH V   + A+  A 
Sbjct: 396 TLNEYQKYIEKDAALERRFQPVLIAEPSVVQTINILRGLRDRLEAHHKVTIQDDAIVGAA 455

Query: 386 ELSAKYINERHLPDKAIDVIDEAGARARLMPASRR------------------------- 420
           ELS +YI+ R LPDKAID+ID+A AR  L   SR                          
Sbjct: 456 ELSDRYISGRFLPDKAIDLIDQAAARVNLSSTSRPAAVLELEAEITQLRREQDYAASRKQ 515

Query: 421 -------------------------KKTVG-------VAEIESMVAKMARIPEKSVSSSD 448
                                    +K+VG       V  +  +VA++  IP   +++ +
Sbjct: 516 FDRAHALDGEIATKEQALHDETAAWQKSVGTNTSHVSVTHVAEIVARLTGIPVAQLTAEE 575

Query: 449 KDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVT 508
           K  L N+++++   V GQD A+  +++A++ +RAGL A H+P   FLF GPTGVGKTE+ 
Sbjct: 576 KQRLLNMEERLHRRVIGQDEAVVAVSDAVRRSRAGLQARHRPTAVFLFLGPTGVGKTELA 635

Query: 509 LQLSKLL-GIE--LLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVL 565
             L++++ G E  +LRFDMSEY ERH+V+RLIGAPPGYVGYD+GG LT+ V + P+SV+L
Sbjct: 636 KALAEVVFGDEDAMLRFDMSEYMERHTVARLIGAPPGYVGYDEGGQLTERVRRKPYSVIL 695

Query: 566 LDEIEKAHPDIFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAG---VAETVKKSIGL 622
           LDEIEKAHPD++N+LLQV D+G LTD  GR  DF N +++ T+N G   +A   +   G 
Sbjct: 696 LDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVVDFSNTLIIATSNLGADVIAGQSRSGPGF 755

Query: 623 IQQDNS----HDAMSEIKKVFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDA 678
           +    S       M+ +++ F PEF NR+D II F SL       +V   +  +     +
Sbjct: 756 LSDAGSASLQGSVMNVLRQHFRPEFLNRIDDIILFKSLGRDETRHIVRLQLEHVSRLASS 815

Query: 679 RGVSLEVSEDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDG 731
           + + L   +     LA +GY  E GAR + R IQ+Q++  LA  +L G + +G
Sbjct: 816 QDIVLAFDDSIVDHLATEGYRPEFGARELRRQIQQQIENQLAKAMLNGDVKEG 868



 Score = 29.6 bits (65), Expect = 7e-04
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLE--NDAAREALLACQADIDVLRRE 57
           ++  L+S+L  AF  +R   H ++  EHLL+ L E     A + L         LRR+
Sbjct: 160 VSPRLKSALERAFIASRQLGHSYVGAEHLLIGLAEVPESFAGQLLARLGVQSQALRRQ 217