Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., ATP-dependent chaperone ClpB from Enterobacter asburiae PDN3

 Score =  288 bits (738), Expect = 6e-82
 Identities = 176/459 (38%), Positives = 264/459 (57%), Gaps = 26/459 (5%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAAREALLACQADIDVLRRELDTF 61
           L  + + +L  A + A    ++F+   HL+ ALL  +      L   A I+    +L T 
Sbjct: 6   LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINA--GQLRTA 63

Query: 62  IDQTTPLIPKNDETR-ETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHA 120
           IDQ    +P+ + T  + QP+    R L       Q  G + ++    ++A   E     
Sbjct: 64  IDQALSRLPQVEGTGGDVQPSQDLVRALNLCDKLAQKRGDNFISSELFVLAAL-ESRGTL 122

Query: 121 AYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADER--LESFATN 178
             LLK    +  ++   I                   G    +++ + D+R  L+ F  +
Sbjct: 123 TDLLKSAGATTANVTQAIEK---------------MRGGESVNDQGAEDQRQALKKFTVD 167

Query: 179 LNQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGN 238
           L + A+QG++DP+IGRD+E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RIV G 
Sbjct: 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGE 227

Query: 239 VPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEKEK-DAILFIDEIHTIIGAG 297
           VPE ++   + +LD+G+L+AG KYRG+FE+R K +L  L K++ + ILFIDE+HT++GAG
Sbjct: 228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAG 287

Query: 298 AASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDT 357
            A G  +DA N++KP L+ G+L C+G+TT  EY    EK+ AL RRFQK+ + EPS++DT
Sbjct: 288 KADGA-MDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 346

Query: 358 TKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPA 417
             IL GLK +YE HH V+ T+ A+ AA  LS +YI +R LPDKAID+IDEA +  R+   
Sbjct: 347 IAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQID 406

Query: 418 SRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLD 456
           S+ ++   +  ++  + ++    +     SD+   K LD
Sbjct: 407 SKPEE---LDRLDRRIIQLKLEQQALKKESDEASKKRLD 442



 Score =  279 bits (713), Expect = 5e-79
 Identities = 153/416 (36%), Positives = 250/416 (60%), Gaps = 18/416 (4%)

Query: 345 QKIDIVEPSLDDTTKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINE-RHLPDKA-- 401
           +++D++   LDD  +    L+ +++A        + ++A +E +   I + R + D A  
Sbjct: 439 KRLDMLNEELDDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARM 498

Query: 402 ----IDVIDEAGARARLMPASRRK------KTVGVAEIESMVAKMARIPEKSVSSSDKDI 451
                  I E   +  +   S  K        V  AEI  ++A+   IP   +   +++ 
Sbjct: 499 SELQYGKIPELEKQLEIAMQSEGKTMRLLRNKVTDAEIAEVLARWTGIPVARMLEGEREK 558

Query: 452 LKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQL 511
           L  ++Q +   V GQ+ A++ ++ AI+ +RAGL   ++P+GSFLF GPTGVGKTE+   L
Sbjct: 559 LLRMEQDLHNRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKAL 618

Query: 512 SKLL---GIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDE 568
           +  +      ++R DMSE+ E+HSVSRL+GAPPGYVGY++GG LT+AV + P+SV+LLDE
Sbjct: 619 ANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDE 678

Query: 569 IEKAHPDIFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQQDNS 628
           +EKAHPD+FN+LLQV+D+G LTD  GR  DFRN +++MT+N G ++ +++  G +   + 
Sbjct: 679 VEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLG-SDLIQERFGELDYGHM 737

Query: 629 HD-AMSEIKKVFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVSE 687
            D  +  +   F PEF NR+D ++ F+ L E+ I  +    +  L  +L+ RG  + +S+
Sbjct: 738 KDLVLGVVSHNFRPEFINRIDEVVVFHPLGEKHIASIAQIQLQRLYKRLEERGYEIHISD 797

Query: 688 DARHWLAVKGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRL 743
           +A   L+  GYD   GARP+ R IQ+Q++ PLA ++L G L+ G  +++  +DDR+
Sbjct: 798 EALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELIPGKVIRLEANDDRI 853