Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., ATP-dependent chaperone ClpB from Escherichia coli ECRC62

 Score =  288 bits (738), Expect = 6e-82
 Identities = 175/459 (38%), Positives = 268/459 (58%), Gaps = 26/459 (5%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAAREALLACQADIDVLRRELDTF 61
           L  + + +L  A + A    ++F+   HL+ ALL  +    + L   A I+    +L T 
Sbjct: 6   LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINA--GQLRTD 63

Query: 62  IDQTTPLIPKNDETR-ETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHA 120
           I+Q    +P+ + T  + QP+    RVL       Q  G + ++    ++A   E     
Sbjct: 64  INQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTL 122

Query: 121 AYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADER--LESFATN 178
           A +LK    +  +I   I                   G    +++ + D+R  L+ +  +
Sbjct: 123 ADILKAAGATTANITQAIEQ---------------MRGGESVNDQGAEDQRQALKKYTID 167

Query: 179 LNQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGN 238
           L + A+QG++DP+IGRD+E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RI+ G 
Sbjct: 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGE 227

Query: 239 VPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEKEK-DAILFIDEIHTIIGAG 297
           VPE ++   + +LD+G+L+AG KYRG+FE+R K +L  L K++ + ILFIDE+HT++GAG
Sbjct: 228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAG 287

Query: 298 AASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDT 357
            A G  +DA N++KP L+ G+L C+G+TT  EY    EK+ AL RRFQK+ + EPS++DT
Sbjct: 288 KADGA-MDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 346

Query: 358 TKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPA 417
             IL GLK +YE HH V+ T+ A+ AA  LS +YI +R LPDKAID+IDEA +  R+   
Sbjct: 347 IAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQID 406

Query: 418 SRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLD 456
           S+ ++   +  ++  + ++    +  +  SD+   K LD
Sbjct: 407 SKPEE---LDRLDRRIIQLKLEQQALMKESDEASKKRLD 442



 Score =  280 bits (716), Expect = 2e-79
 Identities = 158/413 (38%), Positives = 249/413 (60%), Gaps = 13/413 (3%)

Query: 335 EKERALSRRFQKIDIVEPSLDDTTKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINE 394
           +KER  S   ++    + SL  T  I   L+    A    R      R + EL    I E
Sbjct: 450 DKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMS-ELQYGKIPE 508

Query: 395 RHLPDKAIDVIDEAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKN 454
                +A   ++  G   RL+     +  V  AEI  ++A+   IP   +  S+++ L  
Sbjct: 509 LEKQLEAATQLE--GKTMRLL-----RNKVTDAEIAEVLARWTGIPVSRMMESEREKLLR 561

Query: 455 LDQKMKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKL 514
           ++Q++   V GQ+ A+D ++ AI+ +RAGL   ++P+GSFLF GPTGVGKTE+   L+  
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANF 621

Query: 515 L---GIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEK 571
           +      ++R DMSE+ E+HSVSRL+GAPPGYVGY++GG LT+AV + P+SV+LLDE+EK
Sbjct: 622 MFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEK 681

Query: 572 AHPDIFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQQDNSHD- 630
           AHPD+FN+LLQV+D+G LTD  GR  DFRN +++MT+N G ++ +++  G +   +  + 
Sbjct: 682 AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLG-SDLIQERFGELDYAHMKEL 740

Query: 631 AMSEIKKVFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVSEDAR 690
            +  +   F PEF NR+D ++ F+ L E+ I  +    +  L  +L+ RG  + +S++A 
Sbjct: 741 VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEAL 800

Query: 691 HWLAVKGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRL 743
             L+  GYD   GARP+ R IQ+Q++ PLA ++L G LV G  +++ +++DR+
Sbjct: 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRI 853