Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., ATP-dependent chaperone ClpB from Dickeya dianthicola ME23

 Score =  295 bits (754), Expect = 9e-84
 Identities = 178/459 (38%), Positives = 267/459 (58%), Gaps = 26/459 (5%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAAREALLACQADIDVLRRELDTF 61
           L  + + +L  A + A  + H+F+   HL+ ALL  +      L      +V R  L + 
Sbjct: 6   LTNKFQLALADAQSLALGRDHQFIEPLHLMSALLNQEGGTVGPLLTATGANVSR--LKSE 63

Query: 62  IDQTTPLIPKNDETR-ETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHA 120
           I Q    +P+ + T  + QP+    R L       Q  G + ++    ++A+F E  S  
Sbjct: 64  IGQAIGRLPQVEGTGGDVQPSSELVRTLNICDKLAQKKGDTFISSELFVLAVF-ESRSAL 122

Query: 121 AYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADER--LESFATN 178
             LLK    ++ ++   I                   G    +E+ + D+R  L+ F  +
Sbjct: 123 GDLLKNAGATQQNVTQAIEQ---------------VRGGQQVNEQSAEDQRQALKKFTID 167

Query: 179 LNQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGN 238
           L + A+QG++DP+IGRD+E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RIV G 
Sbjct: 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGE 227

Query: 239 VPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEKEK-DAILFIDEIHTIIGAG 297
           VPE ++   + +LD+G+L+AG KYRG+FE+R K +L  L K++ + ILFIDE+HT++GAG
Sbjct: 228 VPEGLKNKRVLALDMGALVAGAKYRGEFEERLKGVLNDLSKQEGNVILFIDELHTMVGAG 287

Query: 298 AASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDT 357
            A G  +DA N++KP L+ G+L C+G+TT  EY    EK+ AL RRFQK+ + EP+++DT
Sbjct: 288 KADGA-MDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPTVEDT 346

Query: 358 TKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPA 417
             IL GLK +YE HH V+ T+ A+ AA  LS +YI++R LPDKAID+IDEA +  R+   
Sbjct: 347 IAILRGLKERYELHHHVQITDPAIVAAAMLSHRYISDRKLPDKAIDLIDEAASSIRMQID 406

Query: 418 SRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLD 456
           S   K   +  ++  + ++    +     SD+  LK L+
Sbjct: 407 S---KPEPLDRLDRRIIQLKLEQQALKKESDEASLKRLE 442



 Score =  268 bits (686), Expect = 7e-76
 Identities = 135/321 (42%), Positives = 211/321 (65%), Gaps = 5/321 (1%)

Query: 427 AEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLGA 486
           AEI  ++A+   IP   +  S+++ L  ++Q++   V GQ+ A++ +  +I+ +RAGL  
Sbjct: 534 AEIAEVLARWTGIPVSRMLESEREKLLRMEQELHQRVIGQNEAVEAVANSIRRSRAGLSD 593

Query: 487 EHKPVGSFLFAGPTGVGKTEVTLQLSKLL---GIELLRFDMSEYGERHSVSRLIGAPPGY 543
            ++P+GSFLF GPTGVGKTE+   L+  L      ++R DMSE+ E+HSVSRL+GAPPGY
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKTLASFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGY 653

Query: 544 VGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPDIFNLLLQVMDNGTLTDNNGRKADFRNVI 603
           VGY++GG LT+AV + P+SV+LLDE+EKAHPD+FN+LLQV+D+G LTD  GR  DFRN +
Sbjct: 654 VGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTV 713

Query: 604 LVMTTNAGVAETVKKSIGLIQQDNSHD-AMSEIKKVFTPEFRNRLDHIIWFNSLDERVIH 662
           ++MT+N G ++ +++  G +  +   D  +S +   F PEF NR+D ++ F+ L +  I 
Sbjct: 714 VIMTSNLG-SDLIQERFGEMNYNQMRDMVLSVVSHHFRPEFINRIDEVVVFHPLGKSHIT 772

Query: 663 QVVDKFIVELQAQLDARGVSLEVSEDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANE 722
            +    +  L  +++ RG ++ VS+ A   L   G+D   GARP+ R IQ+ ++ PLA +
Sbjct: 773 SIAQIQLQRLYKRMEERGYTVTVSDAALELLGRSGFDPVYGARPLKRAIQQMIENPLAQQ 832

Query: 723 LLFGSLVDGGTVKVTLSDDRL 743
           +L G+LV G  V +   D+ +
Sbjct: 833 ILSGALVPGKQVALDADDEAI 853