Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 867 a.a., Chaperone protein ClpB from Azospirillum sp. SherDot2

 Score =  292 bits (748), Expect = 4e-83
 Identities = 171/449 (38%), Positives = 272/449 (60%), Gaps = 29/449 (6%)

Query: 22  HEFMTVEHLLLALLENDAAREALL--ACQADIDVLRRELDTFIDQTTPLIPKNDETRETQ 79
           H+ +T EHLL  LL++     A L  A   D       +D  +D+    +PK + +   Q
Sbjct: 26  HQRLTPEHLLKTLLDDKEGLAANLIRAAGGDPKAALSAVDAELDK----LPKVEGSGAGQ 81

Query: 80  PTLS--FQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHAAYLLKKNDISRLDIVNF 137
             L+    RV ++A    + +G S VT   +L+A+     + +   LK            
Sbjct: 82  LYLTPELSRVFEQAEKVAEKAGDSFVTAERILLALAMADGTPSGKALK------------ 129

Query: 138 ISHGITKASNHSEDSSSDSFGSSDTSEEVSADERLESFATNLNQLAKQGQIDPLIGRDKE 197
            S G+T  + ++  +      ++D++      + L+ +A +L   A+ G++DP+IGRD+E
Sbjct: 130 -SAGVTPQALNTAINDIRKGRTADSASAEQGYDALKKYARDLTAAARDGKLDPVIGRDEE 188

Query: 198 LERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGNVPEVIQRSVIYSLDIGSLL 257
           + RTIQVL RR KNNP+L+GE GVGKTAI EGLA RIV+G+VPE ++   + SLD+G+L+
Sbjct: 189 IRRTIQVLARRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKNKQLLSLDLGALV 248

Query: 258 AGTKYRGDFEKRFKSILKQLEKEK-DAILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS 316
           AG KYRG+FE+R K++L +++    + ++FIDE+HT++GAG  S G +DA+N++KP L+ 
Sbjct: 249 AGAKYRGEFEERLKAVLSEIQAAAGEIVVFIDELHTLVGAGK-SDGAMDASNMLKPALAR 307

Query: 317 GKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDTTKILMGLKTKYEAHHDVRY 376
           G+L C+G+TT  E+    EK+ AL+RRFQ + + EP+++DT  IL GLK +YE HH VR 
Sbjct: 308 GELHCVGATTLDEFRKYIEKDAALARRFQPVFVSEPTVEDTISILRGLKERYEVHHGVRI 367

Query: 377 TNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPASRRKKTVGVAEIESMVAKM 436
           T+ A+ +A  LS +YI +R LPDKAID+IDEA +R R+   S   K   + E++  + ++
Sbjct: 368 TDSAIVSAATLSNRYITDRFLPDKAIDLIDEAASRLRMAVDS---KPEAIDELDRRIIQL 424

Query: 437 ---ARIPEKSVSSSDKDILKNLDQKMKML 462
                  ++   S+ +D L NL++++  L
Sbjct: 425 KIEREALKREQDSASRDRLVNLERELSDL 453



 Score =  276 bits (705), Expect = 4e-78
 Identities = 142/313 (45%), Positives = 207/313 (66%), Gaps = 3/313 (0%)

Query: 427 AEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLGA 486
           ++I ++V++   +P   + + +++ L  ++ K++  V GQD AI  ++ A++  RAGL  
Sbjct: 534 SDIAAVVSRWTGVPVDKMLAGEREKLLAMEDKLRGRVIGQDEAIVAVSNAVRRARAGLQD 593

Query: 487 EHKPVGSFLFAGPTGVGKTEVTLQLSKLLGIE---LLRFDMSEYGERHSVSRLIGAPPGY 543
            ++P+GSFLF GPTGVGKTE+T  L++ L  +   ++R DMSEY E+HSV+R+IGAPPGY
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELTKALAEFLFDDETAMVRLDMSEYMEKHSVARMIGAPPGY 653

Query: 544 VGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPDIFNLLLQVMDNGTLTDNNGRKADFRNVI 603
           VGY++GG LT+AV + P+ VVL DE+EKAHPD+FN+LLQV+D+G LTD  GR  DFRNV+
Sbjct: 654 VGYEEGGALTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNVV 713

Query: 604 LVMTTNAGVAETVKKSIGLIQQDNSHDAMSEIKKVFTPEFRNRLDHIIWFNSLDERVIHQ 663
           ++MT+N G     +++ G        + M  ++  F PEF NRLD I+ F+ LD R +  
Sbjct: 714 IIMTSNLGSQALAEQAEGEDSAAVRDEVMEAVRAHFRPEFLNRLDEILLFHRLDRRHMGG 773

Query: 664 VVDKFIVELQAQLDARGVSLEVSEDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANEL 723
           +V   +  L   L  R ++L V E A  WLA  GYD   GARP+ RVIQ +L+ P+A  +
Sbjct: 774 IVKIQLGRLTKMLADREITLTVDEAATQWLADAGYDPVYGARPLKRVIQRELQNPMATLI 833

Query: 724 LFGSLVDGGTVKV 736
           L G + DG TV V
Sbjct: 834 LEGRIKDGQTVTV 846