Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 874 a.a., ATP-dependent Clp protease, ATP-binding subunit from Agrobacterium fabrum C58

 Score =  289 bits (739), Expect = 5e-82
 Identities = 182/488 (37%), Positives = 279/488 (57%), Gaps = 28/488 (5%)

Query: 3   NKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAAREALLACQADIDVLRRELDTFI 62
           ++ +   L  A   A  + H+  + EH+L  LL+++    A L  +A  D     L    
Sbjct: 7   SERVRGFLQSAQTFALAENHQQFSPEHVLKVLLDDEQGMAASLIERAGGDAKEARLAN-- 64

Query: 63  DQTTPLIPK-NDETRETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHAA 121
           D     +PK +        T    +V   A    + +G S VT   +L A+  E  +  +
Sbjct: 65  DAALAKLPKVSGGNGGLSLTAPLAKVFSTAEDLAKKAGDSFVTVERLLQALAIESSASTS 124

Query: 122 YLLKKNDISRL---DIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADERLESFATN 178
             LKK   +      ++N I  G T  S ++E                   + L+ +A +
Sbjct: 125 ASLKKAGATAQALNQVINDIRKGRTADSANAEQGF----------------DALKKYARD 168

Query: 179 LNQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGN 238
           L + A++G++DP+IGRD E+ RTIQVL RR KNNP+L+GE GVGKTAIAEGLA RIV G+
Sbjct: 169 LTEEAREGRLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGD 228

Query: 239 VPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEKEKDA-ILFIDEIHTIIGAG 297
           VPE ++   + +LD+G+L+AG KYRG+FE+R K++L +++ E    ILFIDE+HT++GAG
Sbjct: 229 VPESLKDKKLMALDMGALIAGAKYRGEFEERLKAVLNEVQAENGGIILFIDEMHTLVGAG 288

Query: 298 AASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDT 357
            A G  +DA+NL+KP L+ G+L C+G+TT  EY    EK+ AL+RRFQ + + EP+++DT
Sbjct: 289 KADGA-MDASNLLKPALARGELHCVGATTLDEYRKHVEKDPALARRFQPVLVDEPNVEDT 347

Query: 358 TKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPA 417
             IL GLK KYE HH VR ++ AL AA  LS +YI +R LPDKAID++DEA +R R+   
Sbjct: 348 ISILRGLKEKYEQHHKVRISDSALVAAATLSNRYITDRFLPDKAIDLMDEAASRLRMQVD 407

Query: 418 SRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAI 477
           S+ ++   + E++  + ++    E     +D+  +  L +K++  +   +   D LT   
Sbjct: 408 SKPEE---LDELDRRIIQLKIEREALKQETDQSSVDRL-RKLEDELADTEEKADALTARW 463

Query: 478 KLTRAGLG 485
           +  +  LG
Sbjct: 464 QAEKQKLG 471



 Score =  275 bits (704), Expect = 6e-78
 Identities = 152/349 (43%), Positives = 218/349 (62%), Gaps = 17/349 (4%)

Query: 408 AGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQD 467
           A AR      S  ++ V    I  +V++   IP   +    ++ L  ++ ++   V GQ 
Sbjct: 517 AEARDSSGAGSMVQEVVTPDNIAHVVSRWTGIPVDKMLEGQREKLLRMEDELAKSVVGQG 576

Query: 468 AAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKLLGIE---LLRFDM 524
            A+  +++A++ +RAGL   ++P+GSF+F GPTGVGKTE+T  L++ L  +   ++R DM
Sbjct: 577 EAVQAVSKAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKSLARFLFDDETAMVRLDM 636

Query: 525 SEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPDIFNLLLQVM 584
           SEY E+HSV+RLIGAPPGYVGY++GG LT+AV + P+ VVL DEIEKAHPD+FN+LLQV+
Sbjct: 637 SEYMEKHSVARLIGAPPGYVGYEEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVL 696

Query: 585 DNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQQDNSHD-------AMSEIKK 637
           D+G LTD  GR  DF+N I++MT+N G       S  + Q  ++ D        M  ++ 
Sbjct: 697 DDGRLTDGQGRTVDFKNTIIIMTSNLG-------SEFMTQMGDNDDVDSVRELVMERVRS 749

Query: 638 VFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVSEDARHWLAVKG 697
            F PEF NR+D II F+ L    +  +V+  +  L + L  R ++LE+ EDAR WLA KG
Sbjct: 750 HFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDEDARSWLANKG 809

Query: 698 YDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRLAFE 746
           YD   GARP+ RVIQ+ ++  LA  +L G + DG  VKVT   DRL F+
Sbjct: 810 YDPAYGARPLKRVIQKSVQDRLAEMILGGEIPDGSRVKVTSGTDRLLFK 858