Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score = 86.3 bits (212), Expect = 9e-22
 Identities = 64/181 (35%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 64  RKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDV---YAAGRLDRDSEGLLILTNDGILQ 120
           R+VI++NKP   +    D +GR T+ D +P          GRLD ++ GLL+ T DG L 
Sbjct: 79  RRVIMYNKPDGEICTRDDPEGRPTVFDKMPKPKEGRWINIGRLDINTTGLLMFTTDGELA 138

Query: 121 ARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRNPP 180
            RL  P  +  + Y V+V G   +  +E L+ GV L+DGP      DI   P     N  
Sbjct: 139 NRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVVLEDGPA--KFTDIKQAPGGEGFN-- 194

Query: 181 VRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNL-GDLQPGEWREV 239
                     W    +MEGRNR+VRR+    G    RL R   G   L  DL  G WRE+
Sbjct: 195 ---------HWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLNSDLPMGRWREM 245

Query: 240 T 240
           +
Sbjct: 246 S 246