Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

 Score = 90.5 bits (223), Expect = 4e-23
 Identities = 68/197 (34%), Positives = 91/197 (46%), Gaps = 17/197 (8%)

Query: 48  ATQTALSPKRPLSPAERKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDV---YAAGRLD 104
           A    L  +   + A R+VI++NKP   +    D +GR T+ D +P          GRLD
Sbjct: 63  AVDGKLIKREEAAEATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLD 122

Query: 105 RDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPA 164
            ++ GLL+ T DG L  RL  P  +  + Y V+V G   +  +E L+ GV L+DGP    
Sbjct: 123 INTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGPA--K 180

Query: 165 KVDIMPEPTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMG 224
             DI   P     N            W    +MEGRNR+VRR+    G    RL R   G
Sbjct: 181 FTDIQKAPGGEGFN-----------HWYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFG 229

Query: 225 DWNL-GDLQPGEWREVT 240
              L  DL  G WRE+T
Sbjct: 230 PVFLNSDLPMGRWREMT 246