Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

 Score = 85.5 bits (210), Expect = 8e-22
 Identities = 68/182 (37%), Positives = 90/182 (49%), Gaps = 25/182 (13%)

Query: 65  KVILFNKPYDTLSQFTDGDGRKTLADYIPIK---DVYAAGRLDRDSEGLLILTNDGILQA 121
           + ++  KP   +S   D   R T+ D +P     D++ AGRLD ++ GL+ILTNDG    
Sbjct: 61  RYLMLYKPTGCVSATHDPQHR-TVLDLLPAALRDDLHIAGRLDFNTTGLMILTNDGQWSR 119

Query: 122 RLTQPQSKAPKTYWVQVEGSPQESDLEALRHG--VTLKDGPTLPAKVDIMPEPTLWPRNP 179
           RLTQP +K PK Y V  E    E  +   R G     +D  T PA++DI+          
Sbjct: 120 RLTQPATKLPKHYLVDTEDEIGEHYVAKFREGFYFAFEDLTTQPAQLDIL---------G 170

Query: 180 PVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLG-DLQPGEWRE 238
           P R R AI         +EGR  QV+RM  H     + L R SMG   L   L PGE+RE
Sbjct: 171 PHRARLAI---------VEGRYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYRE 221

Query: 239 VT 240
           +T
Sbjct: 222 LT 223