Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score =  261 bits (668), Expect = 6e-75
 Identities = 130/204 (63%), Positives = 156/204 (76%), Gaps = 1/204 (0%)

Query: 38  RKSVANKKKNATQTALSPKRPLSPAERKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDV 97
           + S  N +     +  S +R       +VILFNKPYD L QFTD  GRKTL ++IP++ V
Sbjct: 13  KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGV 72

Query: 98  YAAGRLDRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLK 157
           YAAGRLDRDSEGLL+LTN+G LQARLTQP  +  K Y+VQVEG P +  LEALR+GVTL 
Sbjct: 73  YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN 132

Query: 158 DGPTLPAKVDIMPEPT-LWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTL 216
           DGPTLPA  +++ EP  LWPRNPP+R R +IPT+WL ITL EGRNRQVRRMTAH+GFPTL
Sbjct: 133 DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTL 192

Query: 217 RLIRYSMGDWNLGDLQPGEWREVT 240
           RLIRY+MGD++L +L  GEWREVT
Sbjct: 193 RLIRYAMGDYSLDNLANGEWREVT 216