Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Ribosomal large subunit pseudouridine synthase B from Alteromonas macleodii MIT1002

 Score = 89.0 bits (219), Expect = 1e-22
 Identities = 64/181 (35%), Positives = 86/181 (47%), Gaps = 12/181 (6%)

Query: 65  KVILFNKPYDTLSQFTDGDGRKTLADYIPIKDV---YAAGRLDRDSEGLLILTNDGILQA 121
           +V+++NKP   L    D +GR T+ D +P   +      GRLD ++ GLL+ TNDG L  
Sbjct: 65  RVLMYNKPEGELCSRHDPEGRDTVFDRLPAIRLGRWITVGRLDMNTSGLLLFTNDGELAN 124

Query: 122 RLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRNPPV 181
           RL  P+ +  + Y V+V G      L  L+ GV L+DG      + I   PT      P 
Sbjct: 125 RLMHPKCEVEREYAVRVFGEVTGKTLHTLQKGVELEDGEA--KFLTISGAPT------PQ 176

Query: 182 RFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQP-GEWREVT 240
                    W  +TL EGRNR+VRR+    G    RLIR   G   L    P G W E+ 
Sbjct: 177 HAEDESMNRWYNVTLKEGRNREVRRLWESQGVQVSRLIRVKYGPIELQKRLPQGAWVELG 236

Query: 241 L 241
           L
Sbjct: 237 L 237