Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ribosomal large subunit pseudouridine synthase B from Agrobacterium fabrum C58

 Score = 87.8 bits (216), Expect = 5e-22
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 17/185 (9%)

Query: 58  PLSPAER-KVILFNKPYDTLSQFTDGDGRKTLADYIP--IKDVYAAGRLDRDSEGLLILT 114
           P+  AER ++ L++KP   ++  +D +GR T+ D +P  +  V + GRLD ++EGLL+LT
Sbjct: 109 PIRGAERTRLWLYHKPAGLVTTNSDPEGRPTVFDNLPGELPRVLSIGRLDINTEGLLLLT 168

Query: 115 NDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTL 174
           NDG L   L  P +   + Y V+  G   ++ L+ L+ G+ + DG  L   +D   +   
Sbjct: 169 NDGGLSRVLELPTTGWLRRYRVRAHGEVDQAALDKLKDGIAV-DG-VLYGAIDATLD--- 223

Query: 175 WPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQPG 234
                    R      W+ + L EG+NR+++ +   +G    RLIR S G + LGDL  G
Sbjct: 224 ---------RTQGHNVWITMGLREGKNREIKNVLGALGLEVNRLIRISYGPFQLGDLPEG 274

Query: 235 EWREV 239
           +  EV
Sbjct: 275 KVLEV 279