Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., Ribosomal large subunit pseudouridine synthase B from Acinetobacter radioresistens SK82

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 18/180 (10%)

Query: 64  RKVILFNKPYDTLSQFTDGDGRKTLADYIPI--KDVYA-AGRLDRDSEGLLILTNDGILQ 120
           R+V+++ KP   +    D + R T+ D++P    D +   GRLD +S GLL+ TNDG L 
Sbjct: 65  RRVLIYYKPEGEICSRNDPESRPTVFDHLPTIANDRWVMVGRLDINSTGLLLFTNDGELA 124

Query: 121 ARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRNPP 180
            RL  P ++  + Y V+V G       + + +GV L DG   PAK +   E         
Sbjct: 125 NRLMHPSNEIEREYAVRVMGEVTPQIRQNMLNGVVLDDG---PAKFESFSE--------- 172

Query: 181 VRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNL-GDLQPGEWREV 239
                     W  + + EGRNR+VRR+    G    RL+R   G   L  +L+ G W E+
Sbjct: 173 --IGGDGINRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWIEL 230