Pairwise Alignments

Query, 137 a.a., DNA-binding protein H-NS from Vibrio cholerae E7946 ATCC 55056

Subject, 134 a.a., DNA-binding transcriptional regulator H-NS from Erwinia tracheiphila SCR3

 Score =  144 bits (363), Expect = 5e-40
 Identities = 78/135 (57%), Positives = 94/135 (69%), Gaps = 1/135 (0%)

Query: 3   MSEITKTLLNIRSLRAYARELTIEQLEEALDKLTTVVQERKEAEAEEIAARAEQEAKLAA 62
           MSE  K L NIR+LRA ARE ++E LEE L+KL  VV ER++ E +  A   E+  KL  
Sbjct: 1   MSEALKILNNIRTLRAQARECSLETLEEMLEKLEVVVTERRDEENQAQAEIEERTRKLQQ 60

Query: 63  IAEQIAKDGIDLEALISALSGETKTKAKGKRAPRPAKYKYIDTNGEEKTWTGQGRTPSVI 122
             E +  DGID   L+SALS  TK   K KRA RPAKYKY+D NGE KTWTGQGRTP+VI
Sbjct: 61  YREMLIADGIDPNELLSALS-TTKAAGKSKRAARPAKYKYVDENGETKTWTGQGRTPAVI 119

Query: 123 QKALDEGKSLEEFAL 137
           +KAL++GK LE+F L
Sbjct: 120 KKALEDGKQLEDFVL 134