Pairwise Alignments

Query, 137 a.a., DNA-binding protein H-NS from Vibrio cholerae E7946 ATCC 55056

Subject, 134 a.a., DNA-binding protein StpA from Escherichia coli ECRC62

 Score =  123 bits (308), Expect = 1e-33
 Identities = 66/135 (48%), Positives = 89/135 (65%), Gaps = 1/135 (0%)

Query: 3   MSEITKTLLNIRSLRAYARELTIEQLEEALDKLTTVVQERKEAEAEEIAARAEQEAKLAA 62
           MS + ++L NIR+LRA ARE +I+ LEE L+K   V +ER+E E ++    AE++ K++ 
Sbjct: 1   MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60

Query: 63  IAEQIAKDGIDLEALISALSGETKTKAKGKRAPRPAKYKYIDTNGEEKTWTGQGRTPSVI 122
             E +  DGI+ E L+   S       K KR PRPAKYK+ D NGE KTWTGQGRTP  I
Sbjct: 61  WLELMKADGINPEELLGNSSAAAPRAGK-KRQPRPAKYKFTDVNGETKTWTGQGRTPKPI 119

Query: 123 QKALDEGKSLEEFAL 137
            +AL EGKSL++F +
Sbjct: 120 AQALAEGKSLDDFLI 134