Pairwise Alignments

Query, 137 a.a., DNA-binding protein H-NS from Vibrio cholerae E7946 ATCC 55056

Subject, 132 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  103 bits (256), Expect = 1e-27
 Identities = 58/135 (42%), Positives = 89/135 (65%), Gaps = 4/135 (2%)

Query: 3   MSEITKTLLNIRSLRAYARELTIEQLEEALDKLTTVVQERKEAEAEEIAARAEQEAKLAA 62
           MS+    L + R L+   +EL+IE+LE+  +KL+ ++++RKE   E+     E+  KLAA
Sbjct: 1   MSDFLDILTHGRRLQGAVKELSIEELEQVQEKLSGIIEKRKEKLVEQEKLEKEKLEKLAA 60

Query: 63  IAEQIAKDGIDLEALISALSGETKTKAKGKRAPRPAKYKYIDTNGEEKTWTGQGRTPSVI 122
           I +Q+ + G+++E L  AL+ ET  K  GK+  RP KYK +D+ GEE  WTG GR P V 
Sbjct: 61  IKKQMEEAGLNVEDL-QALNVETNKKV-GKK--RPVKYKLVDSKGEEHLWTGIGRMPRVY 116

Query: 123 QKALDEGKSLEEFAL 137
           ++ALD GKSL+++A+
Sbjct: 117 KEALDSGKSLDDYAI 131