Pairwise Alignments

Query, 372 a.a., tRNA 2-thiouridine(34) synthase MnmA from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) from Variovorax sp. SCN45

 Score =  391 bits (1004), Expect = e-113
 Identities = 206/370 (55%), Positives = 258/370 (69%), Gaps = 14/370 (3%)

Query: 10  SQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEYCTAAEDLADAQAVCD 69
           ++++++VG+SGGVDS+V+A+LLKQQG++V G+FMKNWE+DD+ EYC++  D  DA +V D
Sbjct: 2   AKQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSEYCSSNIDFVDAASVAD 61

Query: 70  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
            LGI +  +NFAA+Y D VF  FL EYKAGRTPNPD+LCN EIKFKAFL+ A   L A+ 
Sbjct: 62  VLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMR-LGAEK 120

Query: 130 IAMGHYVRRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEVRRI 189
           IA GHY R        K ++L+GLD +KDQSYFL+ L+  Q+++TLFPVGEL K EVRRI
Sbjct: 121 IATGHYARVRRNDATGKHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTEVRRI 180

Query: 190 AEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKIETPEGKVIGEHQGLMYHTLG 249
           AEE GL  AKKKDSTGICFIGER F DFL+RY+  +PG I+   G+ +GEHQGL ++TLG
Sbjct: 181 AEEIGLPNAKKKDSTGICFIGERPFRDFLNRYISKEPGPIKDDRGRKLGEHQGLSFYTLG 240

Query: 250 QRKGLHIGGMKESSEQ-------PWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 302
           QR+GL IGG+KE   Q       PW+VA KD+++N L  VQG DHP L S  L A    W
Sbjct: 241 QRQGLGIGGVKEKGAQRGSGDHSPWFVARKDVEKNTLWVVQGHDHPWLLSSELKADDASW 300

Query: 303 VD-RTPITEPVRCSVKTRYRQSDIACTI---IPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 358
           V    P         K RYRQ+D AC +      +     + F EPQ AVTPGQSAV Y 
Sbjct: 301 VSGEAPAAGSY--GSKARYRQADAACEMGAGEGGNQAAFSLRFGEPQWAVTPGQSAVLYD 358

Query: 359 GEICLGGGII 368
           GE CLGGG+I
Sbjct: 359 GERCLGGGVI 368