Pairwise Alignments

Query, 372 a.a., tRNA 2-thiouridine(34) synthase MnmA from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) from Sphingobium sp. HT1-2

 Score =  217 bits (552), Expect = 5e-61
 Identities = 136/368 (36%), Positives = 203/368 (55%), Gaps = 31/368 (8%)

Query: 10  SQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEED---DNEEYCTAAEDLADAQA 66
           SQ++++V MSGGVDSSV A L  + G +V G+ ++ ++          C A +D+ DA+A
Sbjct: 12  SQRRIVVAMSGGVDSSVVAALAAKTGAEVIGVTLQLYDHGAAVGRTGSCCAGQDIRDARA 71

Query: 67  VCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLD 126
           V D++GI  +  ++ +++ D+V   F  EY AGRTP P + CN  +KF    + A + L 
Sbjct: 72  VADRIGIAHYVFDYESQFRDSVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQIARD-LG 130

Query: 127 ADYIAMGHYVRRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 186
           AD +A GHYVRR     G   ++ R  D  +DQSYFL+  +  Q+    FP+G L KP+V
Sbjct: 131 ADCLATGHYVRRVEGPQGA--ELHRAADPARDQSYFLFATTQAQLDYLRFPLGGLPKPQV 188

Query: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 244
           R IA E GL  A K DS  ICF+ +  +   + +  P   + G I   +G+V+G H+GL+
Sbjct: 189 REIAAELGLSVALKPDSQDICFVPDGDYAKIVRKLRPDADEGGDIVHVDGRVLGRHKGLI 248

Query: 245 YHTLGQRKGLHIGGMKESSEQPWYVADKDLK-RNVLIAVQGADHPLLKSHGLVAAQLHWV 303
           ++T+GQRKGL IGG  E    P YV   D + R V++  + A    L   G   + ++W+
Sbjct: 249 HYTVGQRKGLEIGGQAE----PLYVVRLDAEGRRVIVGPKVA----LAVSGARLSDINWL 300

Query: 304 DRT---PITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 360
            R    P+T  VR   K            +P   +  +++FD P+  V PGQ+AV Y G+
Sbjct: 301 GRDFTGPLTAKVRSMAKP-----------VPARLEGDRLIFDAPEYGVAPGQAAVLYAGD 349

Query: 361 ICLGGGII 368
             LGGG I
Sbjct: 350 QVLGGGWI 357