Pairwise Alignments

Query, 435 a.a., serine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., Seryl-tRNA synthetase (EC 6.1.1.11) from Variovorax sp. SCN45

 Score =  459 bits (1180), Expect = e-133
 Identities = 244/445 (54%), Positives = 308/445 (69%), Gaps = 21/445 (4%)

Query: 1   MLDSKLLRTELDETAAKLARRGFK---LDVETIRTLEEQRKSIQVEVENLQSTRNSISKQ 57
           MLD  LLR +L    A L +R      LDV     LE +RK++Q   E +Q+ RN+++KQ
Sbjct: 1   MLDITLLRKDLASAVAGLEKRKKNQPYLDVSAFTALEAERKTLQTRTEEIQARRNTLNKQ 60

Query: 58  IGQLMASGDKAGAEAVKQQIGTLGDDLDAKKVELDAVMAQLDAITQTVPNIPDDAVPNGK 117
           IG L A G+    +A+  ++  L  + +++   L+ +  ++ A+   VPN+P  +VP G+
Sbjct: 61  IGPLKAKGESV--DALMAEVNALKAEQESQSKRLEEIQPEIQALLLAVPNLPHASVPLGE 118

Query: 118 DDSENVEVSRWGTP-------KTYDFEVKDHVDLGEMGDGLDFASATKITGARFVVMKGQ 170
           D++ NVE+ RW          K   F  KDHVDLG    GLDF    K+ G+RF VMKG 
Sbjct: 119 DEAGNVEMRRWAPQGGAGADAKPLGFAAKDHVDLGAPL-GLDFEMGAKLAGSRFTVMKGP 177

Query: 171 FARLHRAIAQFMLDLHTDQHGYTELYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKAS 230
            ARLHRA+AQFMLDL T++HGY E YVPY+VNA TL GTGQLPKF  DLF  +   +   
Sbjct: 178 IARLHRALAQFMLDLQTEKHGYAECYVPYIVNAATLSGTGQLPKFEGDLFAAK---KGGQ 234

Query: 231 DEEPR----RLSLIPTAEVPVTNLVRDTILDEAELPLKMTAHTPCFRSEAGSYGRDTRGL 286
           D EP      L LIPT+EVP+TN VRD ++ E++LP+K+TAHTPCFRSEAGS GRDTRG+
Sbjct: 235 DGEPAPDHSALYLIPTSEVPLTNFVRDEVVAESQLPIKVTAHTPCFRSEAGSAGRDTRGM 294

Query: 287 IRMHQFDKVELVQITRPEDSMAALEELTGHAEKVLQLLELPYRKVILCTGDMGFGSCKTY 346
           IR HQFDKVE+VQI  PE S  ALE++TGHAE VLQ LELPYR V+LC+GDMGF + KTY
Sbjct: 295 IRQHQFDKVEMVQIVHPEKSYEALEQMTGHAEAVLQALELPYRVVLLCSGDMGFTAAKTY 354

Query: 347 DLEVWVPAQKTYREISSCSNMWDFQARRMQARFRRKGEKKPELVHTLNGSGLAVGRTMVA 406
           DLEVW+PAQ TYREISS SN   FQARR+QARF +  + K ELVHTLNGSGLAVGR +VA
Sbjct: 355 DLEVWLPAQDTYREISSVSNCEAFQARRLQARF-KNAQGKNELVHTLNGSGLAVGRALVA 413

Query: 407 ILENYQEADGRIAIPAVLQKYMGGL 431
           +LEN+Q  DG I +PA L+ Y+GG+
Sbjct: 414 VLENHQNEDGSINVPAALRPYIGGI 438