Pairwise Alignments

Query, 449 a.a., replication-associated recombination protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., Replication-associated recombination protein RarA from Sphingobium sp. HT1-2

 Score =  358 bits (920), Expect = e-103
 Identities = 200/446 (44%), Positives = 273/446 (61%), Gaps = 29/446 (6%)

Query: 8   FSGDE------DFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPG 61
           FS D+      D  PLA R+RP  +   +GQ+H+ GP   + R + AG + S++ WGPPG
Sbjct: 5   FSSDDVLPAGIDHAPLADRLRPAVLADVVGQEHLTGPDGAIGRMVAAGRLSSILFWGPPG 64

Query: 62  TGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNK 121
           TGKTT++ + A+      E +SAV SGV +++     A+++   G +T+LFVDE+HRFN+
Sbjct: 65  TGKTTISRLLADAVGMRFEPISAVFSGVADLKKVFAAAKDHGRRGEKTLLFVDEIHRFNR 124

Query: 122 SQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIAD 181
           +QQD+FLP +EDGTVT +GATTENPSFELN ALLSRA+V  L  L+   + Q L +A A 
Sbjct: 125 AQQDSFLPFVEDGTVTLVGATTENPSFELNAALLSRAQVLILRRLDADALEQLLDRAEAL 184

Query: 182 TERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAEV 241
             R L    A       + L    +GD R  LN +E LY            ID+P   + 
Sbjct: 185 IGRPLPLDIA-----AREALLASADGDGRFLLNQVETLY-----------SIDIPAPLDP 228

Query: 242 AG------EKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARR 295
           AG       +V+ +D   +  Y+LISA+HKS+RGSDP AALY+ ARM++AG +PLY+ RR
Sbjct: 229 AGLSALLHRRVAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRR 288

Query: 296 LLAIASEDVGNADPRGMQVALAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWK 355
           L+  A+ED+G ADP+ +   LAA D +  +G  EGE AI QA +Y A APKSNA Y A K
Sbjct: 289 LVRFATEDIGLADPQAVIQCLAAKDAYEFLGSPEGELAIVQACIYCATAPKSNAGYMAMK 348

Query: 356 QALSDAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAYAAGECYFPPEMSGTR 415
            A   A        P ++ NAPT+LMK +GYG+ Y+Y HD  G + +G  Y+P EMS   
Sbjct: 349 TAFRTARETGSLMPPMNIVNAPTKLMKQVGYGKNYQYDHDAEGGF-SGANYWPEEMSPQT 407

Query: 416 YYQPTPRGLETKIAEKLAYLADLNAK 441
           +Y PT RG E +IAE++AY   L A+
Sbjct: 408 FYTPTERGFEARIAERIAYWNKLRAE 433