Pairwise Alignments

Query, 327 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., ABC transporter, permease protein PA3837 from Variovorax sp. SCN45

 Score =  311 bits (798), Expect = 1e-89
 Identities = 162/290 (55%), Positives = 219/290 (75%), Gaps = 1/290 (0%)

Query: 14  MSAFAFFGALELGLLYGLVALGVYLTFRVLDFPDLSVDGSFPMGAAVAATAIVAGINPWV 73
           MS  A  GA+E+GL++GLVALGV ++FR+++FPDL+VDGSFP+GAAVAAT IVAG NP  
Sbjct: 1   MSLIASLGAIEIGLIFGLVALGVLMSFRIINFPDLTVDGSFPLGAAVAATLIVAGWNPVA 60

Query: 74  ATGLAILAGAATGWVTAFLSVRCGILHLLASILTMIAAFSINIRIMGRPNLALLGEDTIL 133
           AT +A +AGA +GWVTA+L+V+  I+ LLASIL MIA +SIN+R+MG+PN+AL+ E T+ 
Sbjct: 61  ATAVACVAGAVSGWVTAWLNVKLKIMQLLASILVMIALYSINLRVMGKPNVALITEPTVF 120

Query: 134 TPFEALGDPVL-IRPLVVAVLVVISALLVIRLLNSDFGLGLRATGVNARMVAAQGASTAF 192
           +  +  G P    +PL++ ++V+I+ ++V     S+ GL +RATG NARM  AQG ST F
Sbjct: 121 SMVDFGGMPEQWAKPLLLLLIVIIAKIVVDMFFASEAGLAMRATGGNARMARAQGISTDF 180

Query: 193 YTYFCLALSNGFVGFAGALFAQTNSFADVTSGVGTIVVGLAAVILGQTLIPGRKIWVAVV 252
           +T   LALSN  V  AGALFAQ+   AD++ GVGTIV+GLAAVI+G+TL+P R + +  +
Sbjct: 181 HTMAGLALSNALVALAGALFAQSQGTADISMGVGTIVIGLAAVIIGETLMPARSMVITTL 240

Query: 253 AVIVGSVLYRLAVAFALSSGMFGLQASDLNLVTAVLVALALIMPKIKRNL 302
           A I+G++LYR  +A AL++   GLQA DLNLVTAVLVA AL++P  KR L
Sbjct: 241 ACIIGALLYRFFIAMALNTDFMGLQAQDLNLVTAVLVAFALLVPAYKRKL 290