Pairwise Alignments

Query, 321 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., ABC transporter from Magnetospirillum magneticum AMB-1

 Score =  128 bits (322), Expect = 2e-34
 Identities = 88/314 (28%), Positives = 155/314 (49%), Gaps = 5/314 (1%)

Query: 6   VIATAVLAGAALLSSQSIMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEF 65
           V+ATA+LA   LL    +     KV V  +      +    G   GL   G+ EG  + +
Sbjct: 41  VVATALLAVFILLRWGGVF-DDRKVVVGVLNHAIVAEEALDGFKAGLGGLGWPEGGRVTY 99

Query: 66  DYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQALVSATKT--IPIVFTAVTDPVGA 123
            Y+      A+  + A +     PD+ + ++TP A++     K   IP++F   +DP+  
Sbjct: 100 HYRGPLAGAALDAE-AERLAELKPDLFLTLSTPAAKSAFKVAKNAGIPLIFAPASDPIAI 158

Query: 124 KLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLS 183
            L + L +PG+N TG++        ++ +K +LP++K+I V YNP + + ++ +  +   
Sbjct: 159 GLAENLGRPGRNATGVTFGIQEPVRLQWLKTMLPDLKAILVPYNPDDLSPLASLLKITPL 218

Query: 184 AAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVF 243
           A + GI+L  A     A++ +A  A+A     ++  +D  VAS +  +++A  +   P+ 
Sbjct: 219 AGELGIRLDHAHVRNGAELDAALSAMASDVGAVFVPVDAYVASQVPRIMLATLKRGIPLS 278

Query: 244 GAATSYVERGAIASLGFDYYQIGVQTADYVAAILEGKEPGSLDVQVAKGSDLVINKTAAE 303
                 V+ GA  S G D + +G Q A   A +L G   G L V+ A+   L IN   A 
Sbjct: 279 TPQRRGVQEGAFMSYGLDMHALGAQGARLAAQVLGGVPAGDLPVETAE-FRLTINMDTAG 337

Query: 304 QLGITIPEAVLARA 317
           +LGI++P+ +L +A
Sbjct: 338 RLGISLPDPILRQA 351