Pairwise Alignments

Query, 336 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  273 bits (698), Expect = 4e-78
 Identities = 145/301 (48%), Positives = 204/301 (67%), Gaps = 15/301 (4%)

Query: 22  VHFNITPKSAWPWTKPVTLKAVDGVNVRLYEGETLGVVGESGCGKSTFARAIIGLVQATH 81
           VHF +    A  +    TL+AV+ V++++ E ETL +VGESG GK+T  R + GL   T 
Sbjct: 3   VHFKV---GAGLFKPGKTLRAVEKVSLKIGENETLALVGESGSGKTTLGRVVAGLEVPTA 59

Query: 82  GEVVWLGQDLTRMQEVKRRATRKQIQMIFQDPLASLNPRMTVGDIIAEPLQTFYPELSKQ 141
           G+V + G+         R  +  +IQM+FQDP ++L+PRM VGDI+AEPL+      + Q
Sbjct: 60  GQVRFRGE---------RIQSSGKIQMVFQDPFSALDPRMLVGDIVAEPLRLLGEGTAAQ 110

Query: 142 EVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 201
             ++RV+ M+ +V L  +  +RYPHEFSGGQ QRI IARALI  P++I+ DEP+SALDVS
Sbjct: 111 R-RERVRAMIEQVRLPADAADRYPHEFSGGQRQRIAIARALISNPELIVADEPLSALDVS 169

Query: 202 IQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGVSKELFANPKH 261
           IQ+QV+NL+ +L+    L+L+F++HDL+VV HI+DRV V+YLG  VE+    ELF+ P H
Sbjct: 170 IQSQVLNLIMDLKDSRKLALLFVSHDLAVVHHIADRVAVLYLGRLVEIAGRDELFSRPSH 229

Query: 262 PYTKALMSAVPIPDPNIERNKTIQMLEGDLPSPMNPPSGCVFRTRCPQATAECAKTKPVI 321
           PYT+AL+ A   P     R +    L+G++PSP+NPPSGCVF TRCP+AT  C   +PV+
Sbjct: 230 PYTRALLDAA--PRIGARRQRGASTLKGEIPSPINPPSGCVFHTRCPKATDICRSVEPVL 287

Query: 322 K 322
           +
Sbjct: 288 E 288