Pairwise Alignments

Query, 336 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., putative D,D-dipeptide transport ATP-binding protein DdpF from Escherichia coli ECRC62

 Score =  253 bits (646), Expect = 4e-72
 Identities = 132/318 (41%), Positives = 199/318 (62%), Gaps = 18/318 (5%)

Query: 14  LLDVKDLKVHFNITPKSAWPWTKPVTLKAVDGVNVRLYEGETLGVVGESGCGKSTFARAI 73
           LL ++D  VH N   +  W       + A++G+++++  GETLG+VGESGCGKST A+ +
Sbjct: 5   LLTLRD--VHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLL 62

Query: 74  IGLVQATHGEVVWLGQDLTRMQEVKRRATRKQIQMIFQDPLASLNPRMTVGDIIAEPLQT 133
           +G++Q +HG+ +             R  +++ +QM+FQDPL+SLNPR+ V  II EP   
Sbjct: 63  MGMLQPSHGQYI-------------RSGSQRIMQMVFQDPLSSLNPRLPVWRIITEPFW- 108

Query: 134 FYPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 193
                S+Q+ +   +E+  +VG+ P  ++R PH FSGGQ QRI IARAL  +P +I+ DE
Sbjct: 109 IAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDE 168

Query: 194 PVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGVSK 253
           P SALD+S+QAQ++NLL  LQ   GL+ V I+H++SV++H+SDRV VMYLG  VELG ++
Sbjct: 169 PTSALDISVQAQILNLLVTLQDNHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGEAQ 228

Query: 254 ELFANPKHPYTKALMSAVPIPDPNIERNKTIQMLEGDLPSPMNPPSGCVFRTRCPQATAE 313
           ++   P HPYT+ L+ ++P  D  +E    ++  + DLP     P GC F  RCP AT+ 
Sbjct: 229 QVLTAPAHPYTRLLLDSLPAIDKPLEEEWALR--KTDLPGNRTLPQGCFFYERCPLATSG 286

Query: 314 CAKTKPVIKGSDIHSVSC 331
           C   + +   +D   + C
Sbjct: 287 CEVRQSLTTRADGREIRC 304