Pairwise Alignments

Query, 336 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  268 bits (686), Expect = 1e-76
 Identities = 138/284 (48%), Positives = 191/284 (67%), Gaps = 14/284 (4%)

Query: 40  LKAVDGVNVRLYEGETLGVVGESGCGKSTFARAIIGLVQATHGEVVWLGQDLTRMQEVKR 99
           ++AV+ ++  +  G  L +VGESGCGKST AR + GL + + G   +             
Sbjct: 44  VQAVNDIDFAVPAGGCLSIVGESGCGKSTVARLVTGLFRPSAGAFQFASGG--------- 94

Query: 100 RATRKQIQMIFQDPLASLNPRMTVGDIIAEPLQTFYPELSKQEVKDRVKEMMAKVGLLPN 159
                  QMIFQDP ASLNPR  V +IIAEP++      +K E  +RV+E++  VGL  +
Sbjct: 95  NGKPLSAQMIFQDPYASLNPRWRVKNIIAEPIRELKLRATKAEAMERVEELLQTVGLSAS 154

Query: 160 VINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGL 219
              ++PHEFSGGQ QRI IARAL  +P+ ++CDEP SALDVS+QAQV+NL++ LQ ELGL
Sbjct: 155 DGEKFPHEFSGGQRQRISIARALASEPEFLVCDEPTSALDVSVQAQVLNLMRRLQDELGL 214

Query: 220 SLVFIAHDLSVVKHISDRVLVMYLGNAVELGVSKELFANPKHPYTKALMSAVP-IPDPNI 278
           + +FI+HD+SVV+H+SDR+ VMYLG  VE G ++ELFANP+HPYT+ L+  +P I  P  
Sbjct: 215 TYLFISHDMSVVRHMSDRIAVMYLGRIVEEGDTEELFANPRHPYTRLLLQTIPNIKTPQR 274

Query: 279 ERNKTIQMLEGDLPSPMNPPSGCVFRTRCPQATAECAKTKPVIK 322
           +R    +++ G++PSP+ PPSGC F  RCP ATA+C+   P +K
Sbjct: 275 DR----EIVAGEVPSPLKPPSGCAFHPRCPLATAQCSAEVPKVK 314