Pairwise Alignments

Query, 336 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  263 bits (673), Expect = 7e-75
 Identities = 144/296 (48%), Positives = 197/296 (66%), Gaps = 10/296 (3%)

Query: 5   DKMSVEKKLLLDVKDLKVHFNITPKSAWPWTKPVTLKAVDGVNVRLYEGETLGVVGESGC 64
           D +S  K  +L VKDL   F+I  +S     K   + AV+ V+  L EGETL +VGESGC
Sbjct: 305 DTVSGGKTPILSVKDLTTRFDI--RSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGC 362

Query: 65  GKSTFARAIIGLVQATHGEVVWLGQDLTRMQEVKRRATRKQIQMIFQDPLASLNPRMTVG 124
           GKST  R+I  L++ T G V   G ++ ++     R  R+ +QM+FQDP ASL+PRM+VG
Sbjct: 363 GKSTTGRSITRLIEPTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVG 422

Query: 125 DIIAEPLQTFYPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALIL 184
             I EP    +    K + +++  +++ KVGL P+++ R+PHEFSGGQ QRI IAR+L+L
Sbjct: 423 TAIMEPFME-HRLGQKAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLML 481

Query: 185 KPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLG 244
            PK+I+ DE VSALDVSI+AQV NLL +LQ+ L L+ +FI+HD++VV+ +S RV VMYLG
Sbjct: 482 DPKVIVADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLG 541

Query: 245 NAVELGVSKELFANPKHPYTKALMSAVPIPDP---NIERNKTIQMLEGDLPSPMNP 297
             VE+G    +F NP+HPYTK LMSAVP+PDP    I RN    M   ++ SP+ P
Sbjct: 542 EIVEIGPRAAVFDNPQHPYTKKLMSAVPVPDPARRQIRRN----MATDEIKSPIRP 593



 Score =  190 bits (482), Expect = 9e-53
 Identities = 104/227 (45%), Positives = 152/227 (66%), Gaps = 10/227 (4%)

Query: 54  ETLGVVGESGCGKSTFARAIIGLVQAT----HGEVVWLGQDLTRMQEVKRRATR-KQIQM 108
           ET+ +VGESG GKS  + +I+ L+        G+V+  G+DL  + E + R  R K I M
Sbjct: 49  ETVAIVGESGSGKSVTSLSIMRLLDRKTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISM 108

Query: 109 IFQDPLASLNPRMTVGDIIAEPLQTFYPELSKQEVKDRVKEMMAKVGLLPNVINR---YP 165
           IFQ+P+ SLNP   +G  IAE L T + ++S    K  V  ++ KV + PN  +R   YP
Sbjct: 109 IFQEPMTSLNPIFPIGKQIAEAL-TVHQDISSSAAKAEVIRLLEKVRI-PNAASRFGDYP 166

Query: 166 HEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIA 225
           H+FSGG  QR+ IA AL  KPK++I DEP +ALDV+IQ Q+++L+K+LQ+E G+S++FI 
Sbjct: 167 HQFSGGMRQRVMIAMALASKPKLLIADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFIT 226

Query: 226 HDLSVVKHISDRVLVMYLGNAVELGVSKELFANPKHPYTKALMSAVP 272
           HD+ VV  ++DR +VM+ G+ VE G + ++F   +HPYT+AL+SAVP
Sbjct: 227 HDMGVVAEVADRTIVMFRGDVVETGTTDDIFHRGQHPYTRALLSAVP 273