Pairwise Alignments

Query, 324 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  268 bits (685), Expect = 1e-76
 Identities = 148/325 (45%), Positives = 201/325 (61%), Gaps = 15/325 (4%)

Query: 1   MMSLLDVKDLRVEFSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAK 60
           M  L+DV+DL + F       T V  L+ +++ GET+ +VGESGSGKS T  A+M LL  
Sbjct: 1   MAPLIDVRDLSIAFPR----ATPVRGLSLTVEAGETVALVGESGSGKSLTALALMRLLPD 56

Query: 61  NGKI-TGSAKFEGKE-----ILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLME 114
             +I +G   F G++     +  L +R L +VR   IAM+FQ+PMTSLNP + V  Q+ E
Sbjct: 57  TARIASGEILFRGRDGGVTDLARLEDRALRRVRGRDIAMVFQEPMTSLNPVLSVGQQVAE 116

Query: 115 VLMLHKGMGKAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKL 174
           V+ LH+G+ +  AF  +V +L+ V+IPE R+R+  YPHE SGGMRQRVMIA+A+ C P+L
Sbjct: 117 VVRLHEGLSRRAAFARAVELLDLVRIPEPRRRVGDYPHELSGGMRQRVMIAIAVACTPRL 176

Query: 175 LIADEPTTALDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTME 234
           LIADEPTTALDVT+QAQ+++LL+ L+R+ +  +++ITHDLGVVA   D+V VMYAGR +E
Sbjct: 177 LIADEPTTALDVTIQAQVLDLLDALRRDLSMGLLLITHDLGVVAEWADRVAVMYAGRKVE 236

Query: 235 YGSVNDIFYNPSHPYAEGLLSAIPRLDT----EGEVLPTIPGNPPNLLRLPVGCPYQERC 290
                 +F  P HPY  GLL+A PRLD         L  I G+  +      GC +  RC
Sbjct: 237 DAPFETLFGAPLHPYTRGLLAASPRLDAGQHYSAGALAEIQGSIASAAG-EEGCAFAPRC 295

Query: 291 HRVTDRCKREAPILLPFGNSRQRAC 315
                 C+  AP L         AC
Sbjct: 296 PSARALCRAGAPALEAVAPGHLVAC 320