Pairwise Alignments

Query, 324 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  283 bits (724), Expect = 4e-81
 Identities = 146/313 (46%), Positives = 202/313 (64%), Gaps = 2/313 (0%)

Query: 4   LLDVKDLRVEFSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKNGK 63
           L+D++DL + F T +  V AVN ++ SL +GE LG++GESGSGKS T+ A+M LL K   
Sbjct: 8   LVDIRDLTIRF-TGERTVHAVNGVSLSLGEGEVLGLLGESGSGKSVTMRALMRLLPKRRS 66

Query: 64  -ITGSAKFEGKEILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKGM 122
            I+GS    G+++L + +  L+  R   ++MIFQ+P  +L+P   +  Q+ E +M H+G 
Sbjct: 67  VISGSVHVAGQDVLAMDDATLSDFRGRTVSMIFQEPALALDPVYTIGRQISESVMRHEGA 126

Query: 123 GKAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT 182
            + +A   ++ MLE V+IP A++R+  YPHE SGGMRQR MIA+AL CRPK+L+ADEPTT
Sbjct: 127 SQRDATARALEMLELVRIPSAKRRLDAYPHEMSGGMRQRAMIALALACRPKILLADEPTT 186

Query: 183 ALDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVNDIF 242
           ALD TVQ QI+ LL EL+RE   ++I +THD+GV    CDKV VMYAG+ +E G++ +I 
Sbjct: 187 ALDATVQIQILLLLRELQREMGMSVIFVTHDIGVAIEICDKVAVMYAGQIVETGTLGEIV 246

Query: 243 YNPSHPYAEGLLSAIPRLDTEGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDRCKREAP 302
             P HPY  GLL++       G  L TIPG PP+L + PV C +  RC  V  RC    P
Sbjct: 247 RTPQHPYPRGLLASTVHGAARGARLETIPGTPPSLDKAPVACSFAPRCAFVQPRCTVAPP 306

Query: 303 ILLPFGNSRQRAC 315
            L+  G  R   C
Sbjct: 307 PLVHLGPGRDVRC 319