Pairwise Alignments

Query, 324 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1) from Variovorax sp. SCN45

 Score =  308 bits (788), Expect = 2e-88
 Identities = 151/320 (47%), Positives = 214/320 (66%), Gaps = 1/320 (0%)

Query: 4   LLDVKDLRVEFSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLL-AKNG 62
           LL+V +LR  F T  G+V +V+ ++++++ G TLG+VGESG GKS T  +I+ L+    G
Sbjct: 16  LLEVDNLRTHFHTLAGVVRSVDGVSYTVRAGRTLGVVGESGCGKSVTALSILRLVPTPPG 75

Query: 63  KITGSAKFEGKEILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKGM 122
           +  G+ +  G +++ L ERE+ ++R  +I+MIFQ+PMTSLNP + V  Q+ E + LH+  
Sbjct: 76  RHMGAVRLRGTDLMQLSEREMRQIRGNRISMIFQEPMTSLNPVLTVGRQIAETVQLHQKA 135

Query: 123 GKAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT 182
            +A+A + +V ML  V+IPE  +R+  YPH+ SGGMRQRVMIA+AL C P++LIADEPTT
Sbjct: 136 SRADALKRAVEMLRVVQIPEPERRVNEYPHQLSGGMRQRVMIALALACNPEVLIADEPTT 195

Query: 183 ALDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVNDIF 242
           ALDVT+QAQI++L+  L++E    ++MITHDLGVVA SCD+V+VMYAGR +E   V D+F
Sbjct: 196 ALDVTIQAQILDLIKRLQKELGMGVVMITHDLGVVAESCDRVVVMYAGRKVEEADVIDLF 255

Query: 243 YNPSHPYAEGLLSAIPRLDTEGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDRCKREAP 302
             P HPY   L++++P ++T    L  IPG  P    L  GC +  RC     RC+ EAP
Sbjct: 256 DRPLHPYTRALMASMPAMNTASTRLTEIPGLVPAAHELGRGCAFAARCSHARARCRAEAP 315

Query: 303 ILLPFGNSRQRACFSDWEAW 322
            L   G     ACF+  E W
Sbjct: 316 QLTRQGGDHVVACFAVEEQW 335