Pairwise Alignments

Query, 324 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  276 bits (705), Expect = 1e-78
 Identities = 137/299 (45%), Positives = 200/299 (66%), Gaps = 1/299 (0%)

Query: 5   LDVKDLRVEFSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKNGKI 64
           L+V++L+  F T+ G++  V+ ++F+L +G+ LG+VGESGSGKS T F+IMGL+   GK+
Sbjct: 14  LEVRNLQTRFHTRAGVLPVVDGVSFTLGRGKVLGLVGESGSGKSVTGFSIMGLVDPPGKV 73

Query: 65  TGS-AKFEGKEILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKGMG 123
            G    F+G+E+  LP  E  ++R  +IAMIFQDPM +LNP ++V  Q++E +  HK + 
Sbjct: 74  EGGQVLFQGRELTQLPAIERRELRGNRIAMIFQDPMATLNPVLRVDTQMIEAVKAHKRVS 133

Query: 124 KAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 183
             EA   +   L  + IP   +R+  YPH+ SGGMRQRV IA+A+L  P L+IADEPTTA
Sbjct: 134 TEEARRHARDTLGLMGIPSPEERLRAYPHQLSGGMRQRVAIAIAMLHGPDLIIADEPTTA 193

Query: 184 LDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVNDIFY 243
           LDVT+QAQI+  + +L RE  T++I I+HDL VVA   D++ VMYAGR +E+G+V D+  
Sbjct: 194 LDVTIQAQILSEVQKLVRETGTSLIWISHDLSVVASLADEIAVMYAGRIVEHGTVADVLD 253

Query: 244 NPSHPYAEGLLSAIPRLDTEGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDRCKREAP 302
           +P HPY  GL+ ++P  +  G  L  I G  P+LL++P GC +  RC      C+++ P
Sbjct: 254 HPQHPYTRGLIDSLPSANERGARLRQIQGMTPSLLKMPAGCAFAPRCPHADAACEQQRP 312



 Score =  202 bits (515), Expect = 1e-56
 Identities = 118/298 (39%), Positives = 166/298 (55%), Gaps = 10/298 (3%)

Query: 20  IVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKNGKITGSAKFEGKEILNLP 79
           +  AV+ ++ S++ GE +G+VGESG GKS       GLL       G     GK + +L 
Sbjct: 393 VTHAVDVVDLSVRPGEVVGLVGESGCGKSTLGRIAAGLLTPT---EGEVIVGGKPVASLS 449

Query: 80  ERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKGMGKAEAFEESV--RMLEA 137
            +E    R  +I M+FQDP  SLNP ++VS  + E  MLH G+  A   ++ V  ++  A
Sbjct: 450 AQEQLAARL-RIQMVFQDPYASLNPRLRVSRIVGEAAMLH-GLTDAAGQDDYVCAQLERA 507

Query: 138 VKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMELLN 197
              P  R R   YPH+FSGG RQR+ IA AL  +P +L+ DE   ALDV++QAQI+ L  
Sbjct: 508 GLDPALRHR---YPHQFSGGQRQRIGIARALAVQPSMLVCDEAVAALDVSIQAQILNLFM 564

Query: 198 ELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVNDIFYNPSHPYAEGLLSAI 257
           +L+ +   A + I+HDLGV+   CD+V+VMY GR +E   V D+F  P+HPY + LL+ I
Sbjct: 565 DLRDQLGLAYLFISHDLGVIEHLCDRVVVMYLGRVVESAPVADLFARPAHPYTQALLAEI 624

Query: 258 PRLDTEGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDRCKREAPILLPFGNSRQRAC 315
           P +D  G     I G  P+ +  P GC +  RC +   RC+ E P L         AC
Sbjct: 625 PSIDARGTTFSAIRGEIPSPIAPPSGCHFHPRCPQAMPRCRTEVPRLRGIAIRHATAC 682