Pairwise Alignments

Query, 324 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  263 bits (673), Expect = 6e-75
 Identities = 136/258 (52%), Positives = 175/258 (67%), Gaps = 1/258 (0%)

Query: 4   LLDVKDLRVEFSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAK-NG 62
           +L V++L   F       + V D++F +K GET+ IVGESGSGKS T  ++M LLA  + 
Sbjct: 6   VLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLLAPASS 65

Query: 63  KITGSAKFEGKEILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKGM 122
            I G     G+ +L L ERE+  VR   I+MIFQ+PMTSLNP   +  Q+ EVL+ HKG+
Sbjct: 66  HIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHKGL 125

Query: 123 GKAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT 182
            K EA  E+VR+LE V+IP A  R   YPH+FSGGMRQRVMIAMAL  RPKLLIADEPTT
Sbjct: 126 SKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTT 185

Query: 183 ALDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVNDIF 242
           ALDVT+Q QI++L+  L+ E   +++ ITHD+GVVA   D+ +VMY G  +E G+  DIF
Sbjct: 186 ALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATEDIF 245

Query: 243 YNPSHPYAEGLLSAIPRL 260
               HPY   LLSA+P+L
Sbjct: 246 RRGQHPYTRALLSAVPKL 263



 Score =  181 bits (460), Expect = 3e-50
 Identities = 105/262 (40%), Positives = 155/262 (59%), Gaps = 13/262 (4%)

Query: 4   LLDVKDLRVEF-------STQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMG 56
           +L VK+L   F       + Q G V AV +++F L QGETL +VGESG GKS T  +IM 
Sbjct: 302 VLSVKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMR 361

Query: 57  LLAKNGKITGSAKFEGKEILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVL 116
           L+  +   +G    +G +++ L    L  +R + + MIFQDP +SLNP M V   + E  
Sbjct: 362 LVEPS---SGDVSLDGYDVMRLDTVGLRNMR-KSVQMIFQDPFSSLNPRMTVGTAISEPF 417

Query: 117 MLHKGMGKAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLI 176
           + H+     +A E++  +LE V +  +      YPHEFSGG RQR+ IA AL   PK+++
Sbjct: 418 IKHRLGSTKQAKEKTADLLEKVGL--SADMANRYPHEFSGGQRQRIAIARALALDPKVIV 475

Query: 177 ADEPTTALDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYG 236
           ADE  +ALDV+++AQ+  LL +L++  N A + I+HD+ VV     +V VMY G  +E G
Sbjct: 476 ADESVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 535

Query: 237 SVNDIFYNPSHPYAEGLLSAIP 258
               +F NP HPY + L++A+P
Sbjct: 536 PRAAVFDNPQHPYTKKLMAAVP 557