Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., putative D,D-dipeptide transport system permease protein DdpC from Xanthobacter sp. DMC5

 Score =  176 bits (446), Expect = 6e-49
 Identities = 93/273 (34%), Positives = 146/273 (53%), Gaps = 1/273 (0%)

Query: 29  ARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTDALG 88
           AR     N    ++  + +++ +   F P    Y    +D  A    PSA HWFGTD LG
Sbjct: 22  ARYVISDNPVTGIAFGMFLVLVVCATFGPFIVPYDPLASDTAAALQPPSAAHWFGTDNLG 81

Query: 89  RDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFM 148
           RD+F R +V  R+ + + I    +   +G + G ASGF GG TDR++ RI + + A P  
Sbjct: 82  RDIFSRVVVASRLDMAIAIFSVALVFAVGGVAGIASGFFGGWTDRIIGRISDTIMAFPLF 141

Query: 149 FLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNII 208
            L + +V   G  +  I +A   I +    R+ + +    R+  +++AA + G S+W I+
Sbjct: 142 VLAMGIVAALGNTVTNIVIATAIINFPLYVRVAKSEAAIRRNAGYVQAARLTGNSEWRIL 201

Query: 209 TRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEG-ANTMEVAI 267
              I+PN++ I+ V  +L +   IL  + LSF+GLGV+ P   WG ++ EG A  +    
Sbjct: 202 LTTILPNIMPIMMVQMSLTMGYAILNAAGLSFIGLGVRPPTPEWGIMVAEGSAYIVSGEW 261

Query: 268 WQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR 300
           W  LFP   ++  +FCFN +GDGLRD +DP+ R
Sbjct: 262 WIALFPGLALMFAVFCFNLLGDGLRDIVDPQRR 294