Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., putative D,D-dipeptide transport system permease protein DdpC from Xanthobacter sp. DMC5

 Score =  162 bits (411), Expect = 6e-45
 Identities = 93/256 (36%), Positives = 139/256 (54%), Gaps = 2/256 (0%)

Query: 46  LMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTDALGRDLFVRTLVGGRISLMV 105
           ++L+ +AV+  P  + Y    ++  A    PSA HW GTD LGRD+F R +   R+ L +
Sbjct: 26  VVLVAIAVL-APWITPYDPIASNVPAALQPPSAAHWAGTDQLGRDIFSRLIAATRLDLGI 84

Query: 106 GIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGRNIVLI 165
            +   L++ + G   GA  G+ GGR DR + R++++L A P   L + LV   G  +  I
Sbjct: 85  AVSAVLLSFVAGATIGALCGYAGGRVDRSVGRLVDVLMAFPLFVLAMALVAALGNRVENI 144

Query: 166 FVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYST 225
            +A   I      R  R +    R   ++EAA   G S   I+  +++PN+L  +AV  +
Sbjct: 145 VIATALINLPFYIRFARAEVNVRRHAGWVEAARAGGESHATIVLAYLLPNILPAMAVQIS 204

Query: 226 LLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLL-FPAAFMVLTLFCF 284
           L +   IL  + LSFLGLGVQ P   WG ++ EGA  +    W L+ FP   ++L + CF
Sbjct: 205 LNLGWAILNAAGLSFLGLGVQAPTPEWGIMVAEGARFIGNGQWWLVAFPGLALMLAVLCF 264

Query: 285 NYVGDGLRDALDPKDR 300
           N +GDGLRD LDP+ R
Sbjct: 265 NLLGDGLRDILDPRMR 280