Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  167 bits (422), Expect = 3e-46
 Identities = 93/268 (34%), Positives = 148/268 (55%), Gaps = 1/268 (0%)

Query: 31  IRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTDALGRD 90
           ++ ++    +  + + +L+ LAVV   +++ Y+    D  +    PS  HW GTD  GRD
Sbjct: 1   VKKLKTHTLIGGVLIAVLLVLAVV-AAVWTPYNPLAIDLRSKLQPPSMAHWLGTDEFGRD 59

Query: 91  LFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFL 150
           +  R + G   S +V ++   +A  IG + G  +GF+ G TDRV+M   + L A P + L
Sbjct: 60  VASRAMQGAATSCLVALLTVTLATAIGLVVGVVAGFVRGWTDRVLMAFNDTLLAFPGLLL 119

Query: 151 VIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITR 210
            + ++   G N   I +A+       + R+VRG  LSLR +E++EA+ + G S+   + R
Sbjct: 120 ALGVMVIVGANKWGIVLALSMAYAPSVVRVVRGTVLSLREREYVEASRMIGNSELYTMWR 179

Query: 211 HIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQL 270
           HI+PN +  VAV +T +   ++L+ES LSFLGLGV  P  +WG +L      M  A+W  
Sbjct: 180 HILPNCVAPVAVLATSMFGWVLLSESALSFLGLGVPPPAPTWGNMLASARPYMASAVWLC 239

Query: 271 LFPAAFMVLTLFCFNYVGDGLRDALDPK 298
           + P   + LTL   N +G+ LRD LDP+
Sbjct: 240 VVPGLCIALTLLGINLLGESLRDRLDPR 267