Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  173 bits (439), Expect = 4e-48
 Identities = 100/271 (36%), Positives = 157/271 (57%), Gaps = 6/271 (2%)

Query: 33  FMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYA---MHAGPSAEHWFGTDALGR 89
           F+RN AA+  + +L+ + +  +  P+   Y  +  D  A   +  G  A +  G+D+LGR
Sbjct: 57  FLRNPAAVAGVVLLVCMLILALLAPLL--YPGDPLDMVAPPLLWPGQDAAYPLGSDSLGR 114

Query: 90  DLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMF 149
           D+      G R+SL VG++ A+++++IG L GA +G+ GGR D V++RI E+   +P   
Sbjct: 115 DVIAGIAHGARVSLAVGVVAAVLSLVIGVLVGATAGYFGGRIDDVLVRITELFQTMPSFL 174

Query: 150 LVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIIT 209
            VIV+V     ++ +I  AIG  +W  +AR+VR +  +LR  EF+ AA   G S   II 
Sbjct: 175 FVIVVVAIGQPSVPVIVCAIGLASWPVIARLVRAEFRALRETEFVLAARSQGFSHARIIF 234

Query: 210 RHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQ 269
           + ++PN L  V V +++L+ S IL ES LSFLG+G      SWG+++ +G   +  A + 
Sbjct: 235 QEMLPNALPPVIVTTSVLVASAILIESALSFLGMG-DPNAVSWGSMIGQGRELLRTAWYL 293

Query: 270 LLFPAAFMVLTLFCFNYVGDGLRDALDPKDR 300
              P A +VLT+   N VGDGL DA +P+ R
Sbjct: 294 TALPGAAIVLTVLALNLVGDGLNDAFNPRLR 324