Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  171 bits (434), Expect = 1e-47
 Identities = 95/273 (34%), Positives = 149/273 (54%), Gaps = 11/273 (4%)

Query: 33  FMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGP-----SAEHWFGTDAL 87
           F+RN AA+  + +L+++    +  P          D + + A P     S + W G+D L
Sbjct: 35  FLRNPAAIAGMAMLLIVLAVAIAGPWVYP-----ADPFEIKAAPLTPPFSEDAWLGSDYL 89

Query: 88  GRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPF 147
           GRD+    + GGR +L+VG + AL++VLIG   GA +G+ GG+ D  +M++ E    +P 
Sbjct: 90  GRDVLTALIYGGRATLLVGAVAALLSVLIGITLGAFAGYYGGKIDAALMKLTEFFQVLPA 149

Query: 148 MFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNI 207
           +   +V+VT F   +V + +AIG ++W   AR+ R + +  R  EF+ A    G     I
Sbjct: 150 LLFAMVVVTLFSPTLVTVTLAIGIVSWTGTARLTRAEFMKYRGLEFVRAERAIGAGDARI 209

Query: 208 ITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAI 267
           I + I+PN L  + V +TL I + IL E+ LSFLGLG    M SWG ++      +    
Sbjct: 210 IWKVILPNALPPLVVSATLAIGAAILFEAGLSFLGLGDPNQM-SWGLMIGSSRQYVLSCW 268

Query: 268 WQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR 300
           W + FP A + +T+   + +GDGL DAL+PK R
Sbjct: 269 WAVAFPGAAIFITVLAVSLIGDGLNDALNPKLR 301