Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  183 bits (464), Expect = 5e-51
 Identities = 101/274 (36%), Positives = 147/274 (53%)

Query: 26  WQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTD 85
           W    +R +R+ A +  L +L  + LA +F P  + +     +       P A HW GTD
Sbjct: 24  WYRMGLRTVRSPAMVFGLVILAAMVLAALFAPWLAPFDPNAQNVQQRLLPPGAAHWLGTD 83

Query: 86  ALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAI 145
            LGRDL  R + G R +L++  + AL++  +G L G  +G+ GG  D ++MR+ +I  A 
Sbjct: 84  QLGRDLLSRVIYGTRPTLLIVSLVALLSAPLGLLLGMCAGYFGGWIDTLLMRVTDIFMAF 143

Query: 146 PFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKW 205
           P + L + LV   G  IV   +AI   AW   ARI R +T ++R  +FI+AA V G+   
Sbjct: 144 PRLVLALALVAVLGPGIVNAVIAIAITAWPAYARIARTETRTVRGSDFIQAARVQGLRPA 203

Query: 206 NIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEV 265
            I+  H++P  L    V  TL +  +ILT + L FLGLG Q PM+ WGA++  G   +  
Sbjct: 204 RILFGHLLPICLPSTVVRVTLDMAGIILTAAGLGFLGLGAQPPMSEWGAMISTGRQYIFD 263

Query: 266 AIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPKD 299
             W    P   ++L    FN VGDGLRD LDPK+
Sbjct: 264 QWWVAAVPGVAILLGSLAFNLVGDGLRDVLDPKN 297