Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  181 bits (459), Expect = 2e-50
 Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 17/293 (5%)

Query: 23  RSLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYED---TDWYAMHAGPSAE 79
           RS+W       + +K A +SL VL+L+ +     P++ A    D   +D +  ++ PSA 
Sbjct: 14  RSIWATRWQALLHHKPAAISLVVLVLLAVFCFSAPLYGALMGIDPNASDLFERYSEPSAR 73

Query: 80  HWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRIL 139
           +  GTD +GRD+ +R + GG+ISL VG++  L   +IG   G  +GF+GGRTD  +MR  
Sbjct: 74  YLLGTDEIGRDVLLRLMYGGQISLAVGVLATLFGAVIGVAIGVLAGFVGGRTDAFLMRAT 133

Query: 140 EILYAIPFMFLVIVLVTFFGRNIVL--------------IFVAIGAIAWLDMARIVRGQT 185
           + + A+P + L++V+       + +              I + I  + W  +AR+VR  T
Sbjct: 134 DCMIALPLVPLLVVMAAIDLSKLGVPHDLAQSPMVSFWRIVIIISLVDWTTIARVVRAGT 193

Query: 186 LSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGV 245
           L++R ++++ +A V G S    I  H++PNV   + V STL +  +IL ES LSFLG+GV
Sbjct: 194 LTVRGQDYVLSARVSGGSGLYNILTHVLPNVATPIIVASTLTVSRVILLESTLSFLGVGV 253

Query: 246 QEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298
             P  +WG +L         A    ++P   + +T+  FN++GDGLR A DP+
Sbjct: 254 MPPTPTWGNMLNNAQELATTAPMLAVYPGLLIFVTVIAFNFLGDGLRVAFDPR 306