Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., D-ala-D-ala transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  194 bits (494), Expect = 2e-54
 Identities = 100/259 (38%), Positives = 152/259 (58%)

Query: 40  MVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTDALGRDLFVRTLVGG 99
           + S  +++L+ L ++F P  + +     D  A    PSA HWFGTD +GRDLF R LVG 
Sbjct: 34  VTSAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGS 93

Query: 100 RISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFG 159
           + S++ G++   +A +IG+L G  SG +GGR D ++MRI++I+ +IP + L + L    G
Sbjct: 94  QQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALG 153

Query: 160 RNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGI 219
            ++    +AI  +      R+ RGQ L +R   +++AA   G S+W++I  HI+ N L  
Sbjct: 154 PSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPP 213

Query: 220 VAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVL 279
           + V ++L I S IL  + L F+GLG Q+P   WGA++  G N +    W   FP A ++L
Sbjct: 214 LIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILL 273

Query: 280 TLFCFNYVGDGLRDALDPK 298
           T   FN  GDG+RD LDPK
Sbjct: 274 TAVGFNLFGDGIRDLLDPK 292