Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  217 bits (553), Expect = 2e-61
 Identities = 116/281 (41%), Positives = 169/281 (60%), Gaps = 5/281 (1%)

Query: 21  QGRSLWQDARIRFMRNKAAMVS-LFVLMLITLAVV--FLPMFSAYSYEDTDWYAMHAGPS 77
           Q R+ W +   RF R   AM + LFV++LI +A+   ++  + A +Y D D   ++ GPS
Sbjct: 22  QVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYD--NLNNGPS 79

Query: 78  AEHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMR 137
            +HWFG D+LGRD+F R LVG +ISL  G+    +   IGTL G  +G+  G  DR++MR
Sbjct: 80  LQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMR 139

Query: 138 ILEILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAA 197
           I ++L+A P + L I +V   G  I  + +A+   +    AR+VRG TL L+ + FIE+A
Sbjct: 140 ICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESA 199

Query: 198 HVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQ 257
              G S   ++ RHI+P  +  + V+ T+ I + I++ + LSFLGLG Q P   WGA+L 
Sbjct: 200 RSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLN 259

Query: 258 EGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298
           E    M +A    +FPA  + LT+  FN +GDGLRDALDPK
Sbjct: 260 EARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPK 300