Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  215 bits (548), Expect = 9e-61
 Identities = 116/279 (41%), Positives = 167/279 (59%), Gaps = 5/279 (1%)

Query: 23  RSLWQDARIRFMRNKAAMVS-LFVLMLITLAVV--FLPMFSAYSYEDTDWYAMHAGPSAE 79
           R+ W +   RF R   AM + LFVL+LI +AV+  ++  F A +Y D D   ++ GPS  
Sbjct: 24  RTPWSEFWRRFRRQPVAMTAGLFVLLLIAVAVIAPWVAPFDAENYFDYD--RLNDGPSML 81

Query: 80  HWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRIL 139
           HWFG D+LGRD+F R LVG +ISL  G+   L+   IGT+ G  +G+  G  DR++MRI 
Sbjct: 82  HWFGVDSLGRDIFSRVLVGAQISLAAGVFAVLIGAAIGTVLGLVAGYYEGWWDRIIMRIC 141

Query: 140 EILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHV 199
           ++L+A P + L I +V   G  +  + +A+   +    AR+VRG TL L+ + FIE+A  
Sbjct: 142 DVLFAFPGILLAIAVVAIMGSGMANVIIAVAVFSIPAFARLVRGNTLVLKQQTFIESARS 201

Query: 200 CGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEG 259
            G S   I+  HI+P  +  + VY T+ I   I++ + LSFLGLG Q P   WGA+L E 
Sbjct: 202 MGASDATILFSHILPGTVSSIVVYFTMRIGVSIISAASLSFLGLGAQPPTPEWGAMLNEA 261

Query: 260 ANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298
              M +A    +FP+  + LT+  FN +GDGLRDALDP+
Sbjct: 262 RADMVIAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPR 300