Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., D,D-dipeptide ABC transporter permease from Escherichia coli ECOR38

 Score =  194 bits (493), Expect = 2e-54
 Identities = 99/254 (38%), Positives = 151/254 (59%)

Query: 45  VLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTDALGRDLFVRTLVGGRISLM 104
           +++L+ L ++F P  + +     D  A    PSA HWFGTD +GRDLF R LVG + S++
Sbjct: 39  IIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSIL 98

Query: 105 VGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGRNIVL 164
            G++   +A ++G+L G  SG +GGR D ++MRI++I+ +IP + L + L    G ++  
Sbjct: 99  AGLVVVAIAGMMGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFN 158

Query: 165 IFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYS 224
             +AI  +      R+ RGQTL +R   +++AA   G S+W++I  HI+ N L  + V +
Sbjct: 159 AMLAIAIVRIPFYVRLARGQTLVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQA 218

Query: 225 TLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLFCF 284
           +L I S IL  + L F+GLG Q+P   WGA++  G N +    W   FP A ++LT   F
Sbjct: 219 SLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGF 278

Query: 285 NYVGDGLRDALDPK 298
           N  GDG+RD LDPK
Sbjct: 279 NLFGDGIRDLLDPK 292