Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  164 bits (416), Expect = 2e-45
 Identities = 96/236 (40%), Positives = 137/236 (58%), Gaps = 16/236 (6%)

Query: 74  AGPSAE-HWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTD 132
           A P A  H  GTD LGRD+  R  +G ++SL VG++G  V+  IG   G  +G+ GG  D
Sbjct: 164 APPGASLHLLGTDRLGRDMLSRLAIGAQLSLTVGLLGIAVSFAIGITLGGMAGYFGGWID 223

Query: 133 RVMMRILEILYAIPFMFLVIVL----------VTFFGRNIVLIFVAIGAIAWLDMARIVR 182
             + R+ EIL ++P + L + L          VT F    + I V +G + W  +AR VR
Sbjct: 224 AGVQRLSEILKSLPELPLWLALSAAVPAQWSPVTVF----LCISVILGLLDWPSLARAVR 279

Query: 183 GQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLG 242
            + L+LR ++F+ AA + G S   II RH++PN    +   +TL IP+MIL E+ LSFLG
Sbjct: 280 SRFLALREEDFVMAAELMGASPARIIRRHLLPNFASHLLASATLSIPAMILGETALSFLG 339

Query: 243 LGVQEPMTSWGALLQEGANTMEVAIWQ-LLFPAAFMVLTLFCFNYVGDGLRDALDP 297
           LG++ P TSWG +L +  N M V  +  +  P   ++L +  FN+ GDGLRDALDP
Sbjct: 340 LGLRPPATSWGVMLNDAQNLMAVETYPWVSLPMLPVILVVLSFNFFGDGLRDALDP 395