Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  168 bits (425), Expect = 2e-46
 Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 7/225 (3%)

Query: 80  HWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRIL 139
           H+ GTD  GRD+  R + G RISL + +    +  +IGT  G  SG+ GG  D  + R +
Sbjct: 153 HFLGTDKFGRDVLSRAIYGSRISLAIALSVVAIVTVIGTSVGLISGYFGGPLDAWLQRFV 212

Query: 140 EILYAIPFMFLVIVLVTFFG----RNIVLIFVA--IGAIAWLDMARIVRGQTLSLRSKEF 193
           E++ A P + L + L +         + L+FV   + A+ W  M+R VRG+TL+L   ++
Sbjct: 213 EVVLAFPQLPLYLALTSLIPVTAPTTVFLLFVVGVMSALGWAQMSREVRGKTLALARIDY 272

Query: 194 IEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWG 253
           + AA   G +   II +HI+PNV+  V V  TL IPS++L ESFL FLG  V+ P+ SWG
Sbjct: 273 VRAAIAVGATDRRIIFQHILPNVMSHVIVAVTLHIPSVVLLESFLGFLGFAVKPPLISWG 332

Query: 254 ALLQEGANTMEVAIWQ-LLFPAAFMVLTLFCFNYVGDGLRDALDP 297
            +LQ+ A    +  +  +L P  F+++T+F FN +GDGLRDA+DP
Sbjct: 333 LMLQDTATYSVIGSYPWILAPVGFVLVTVFAFNALGDGLRDAVDP 377