Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  195 bits (496), Expect = 1e-54
 Identities = 115/335 (34%), Positives = 177/335 (52%), Gaps = 30/335 (8%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS---SERPLPPEVMANINAKYGLDK 57
           M  FIA+R+   IPT   +  ++F L+R  PG+P      ER + PE+ A    + GL+K
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+  QYL Y+  + QGD G S + +     E  A   P ++++ +AA +F  I+G+  G 
Sbjct: 61  PLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTA-LFPATLELSMAALLFAGILGLLAGV 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQD--------- 168
           IAALK+ +  D+ +M  ++ G  MP F    +LI  F++     P  G  D         
Sbjct: 120 IAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRT 179

Query: 169 -----------------GGFEYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARA 211
                                ++ LP + +  + +A  AR+TR SM+E L  ++IRTA+A
Sbjct: 180 GFMLIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKA 239

Query: 212 KGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRD 271
           KGLS   +V  H L+ AL+PV++ +G     ++ G+V+ ETIF  PGIGK  + A   RD
Sbjct: 240 KGLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 272 YSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
           Y +V    +LI  L IL N +VDIL  + +P+IR+
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGFANPRIRH 334