Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  200 bits (509), Expect = 3e-56
 Identities = 112/334 (33%), Positives = 185/334 (55%), Gaps = 30/334 (8%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSS---ERPLPPEVMANINAKYGLDK 57
           M +FI  R+   +PT + +  ++FFL+R  PG+P  +   ER + P   A +   YG DK
Sbjct: 1   MFRFILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMAGERGIDPARHAELRTAYGFDK 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           PV  QY  Y+  ++ GD G S   +D  ++E +A   P +V++ + A +F +++G+  G 
Sbjct: 61  PVIVQYGIYIGRVLHGDLGKSIITQDTVMSEFLA-LFPATVELAVCAILFALLLGLPAGI 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG------------ 165
           +AA+++N+  D+ +M+T++ G  MP F    +LI  F++Q    P  G            
Sbjct: 120 LAAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYYIEPET 179

Query: 166 ----------WQDGGF----EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARA 211
                        G F     ++ LP + +  + +A  AR+TR +M+E L  ++IRTARA
Sbjct: 180 GFLLIDSLRAGDTGAFWSALHHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDYIRTARA 239

Query: 212 KGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRD 271
           KGLS   +V  HAL+ AL+PVV+ +G     + TG+++ ETIF  PG+GK  + A   RD
Sbjct: 240 KGLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRRD 299

Query: 272 YSLVMGVTILIGFLFILFNAIVDILLAYIDPKIR 305
           Y ++ G  +L+G + +L N +VD+    I+P+IR
Sbjct: 300 YPVLQGGMLLLGGIVMLVNLLVDVAYGVINPRIR 333